Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3627 ATGGGGAGAAGAAAGTGTTCACATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACCCTTGGAGGACTTCGTCTCTTTGGGGTCCAACTATCATCTTCCTCCTCCTCATCATCATCTAGTAACATGATCAAGAAAAGCTTTAGCATGGATACCTTTCCCTCACCATCATCTCCATCTTCCTCATTCTCTTCATCAACATCATTAACCAATATTGATGAAAATCATTATCATAAATCCACTTCTAATATTGCTTATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGAAAGAAAGGAGTTCCATGGACAGAAGAAGAGCACAGAATGTTCCTTGTTGGATTAGAGAAGCTAGGAAAAGGAGACTGGAGAGGAATCTCTAAAAACTTTGTCACTTCAAGAACTCCTACACAAGTTGCTAGCCATGCTCAAAAATACTTTCTCAGATTGGCTACTATCAACAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGGAGCAAGAAAACCAACACAAAAGACCAAGGGTATGCTAATTCAGTAGTAAATTTGGGTGATAAATTTGAGGATAAGTGTAAATGTGAAGTTGAAATTAATGATGGCACCACTTTGTCCTACTTTAAACAAGAAGAAGAAGCCAAATCAGAAAAGCAAGAAAATACTAATTACTCTACAACTAATTGGCTATATGACTCTTCAAATTGTGCAGCAGTGCCTAATTTGGACCTCACACTTTCAGTTGCATCCCCTAATGCTAACAAGACGAAGCTTGAACAGAATCAACCCTCCCCTGCTGGCTCATTCCTTCTTGGCCCAATTAGTGTCACTTAA 843 0.3926 MGRRKCSHCGKIGHNCRTCTSFTLGGLRLFGVQLSSSSSSSSSSNMIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDENHYHKSTSNIAYLSDCFIGPPQERKKGVPWTEEEHRMFLVGLEKLGKGDWRGISKNFVTSRTPTQVASHAQKYFLRLATINKKRRSSLFDLVGSKKTNTKDQGYANSVVNLGDKFEDKCKCEVEINDGTTLSYFKQEEEAKSEKQENTNYSTTNWLYDSSNCAAVPNLDLTLSVASPNANKTKLEQNQPSPAGSFLLGPISVT* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3627 280 SUPERFAMILY Homeodomain-like 100 155 IPR009057 -
Mtr8g3627 280 CDD SANT 106 151 IPR001005 -
Mtr8g3627 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 153 IPR006447 GO:0003677
Mtr8g3627 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 155 IPR017930 -
Mtr8g3627 280 PANTHER TRANSCRIPTION FACTOR KUA1 3 280 - -
Mtr8g3627 280 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 280 - -
Mtr8g3627 280 Pfam Myb-like DNA-binding domain 106 151 IPR001005 -
Mtr8g3627 280 SMART sant 103 153 IPR001005 -
Mtr8g3627 280 Gene3D - 105 158 - -
Mtr8g3627 280 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Mtr8g3627 280 MobiDBLite consensus disorder prediction 258 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3627 Mtr-Chr8 46861768 46863573 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr8g3627 Myb_DNA-binding 3.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3627 - - cam:101500241 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3627 8 46861768 46863573 Mtr8g3627 8 46861768 46863573 ECH