Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3610 ATGACTACCACGCTGGAAGAAGGTCCCTCCGCCGCCATCGCCGCCGTAGCTTCCGAAGGAGAAGACAAGAATGACGGCGGCGTAAACAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTTTACCTGGTACCCATGTCGTTTACTTCCCTCAAGGCCACTCCGAACAAGTTGCAGCATCTTTGAAGAAAGATGGGGATGTCCAAGTACCAAACTATTCCAATCTTCCCTCCAAGTTGCCTTGTACTCTTCACAGTCTCACCTTACATGCAGATTCAGACACAGACGAAGTATATGCCCGGATGACACTTCAGCCAGTGTCTAGTTTTGACATGGATGCCATATTAAGATCAGATATTTCTCTCAAGTCGAACAAGCCACAACCTGAGTTTTTCTGCAAGCAATTGACAGCTAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCCCGCCGTGCTGCAGAGAAGATTTTCCCCCCACTTGATTTCTCAGCGCAGCCTCCTGCTCAAGAACTTGTGGCAAAGGATTTGCATGGAAATGTTTGGAAGTTCCGCCATATATACCGTGGACAACCGAAACGCCACTTGCTTACAACCGGATGGAGTCTATTTATCAGTGGGAAGAGGCTTTTAGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGGCAACCGACTAATTTATCTTCCTCAGTACTGTCAAGTGATAGTATGCACATTGGAATCCTGGCTGCAGCAGCTCATGCTAGTGCAAACAATAGTCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAATTTGTTATTCCATTGGCCAAGTACTACAGGGCAGTATACAGCCACCAAATATCACCTGGCATGCGCTTTAGAATGATGTTTGAAACAGAAGACTCAGGAACAAGAAGATATATGGGTACAGTTATTGGTGTTAGTGATCTGGATTCCGTGAGATGGAAAAACTCGCAGTGGCGTAATTTGCAGGTTGGTTGGGATGAAGCCACCGCTGGGGAAAGGCGGAGTAGGGTCTCAATCTGGGAAATTGAACCTGTTACTGCTCCATTTTTCATCTGTCCACCTCCATTCTTCAGACCCAAGAGACCAAGACAACCCGGAATGCCTGACGATGAGTCATTTGATTTCAGTAACCTTTTCAAGAATACAATGCCTTGGCTTGGTGATGATATGTGTATGAAGGATCCCCAGGCTTTCCCTGGCATGAGCTTAGCTCAATGGATGAACATACAGCAAAATCCTGCTATGGTTAGCTCATTGCAACCAAATCATGTGCCTTCCATGCCTGCATCTGTTGTACAGAATCTTCCTGGATCCGATATTGCCCATCAATTGGGATTTTCTACTCAACAAATCTCTCAATCAAACAATGTAGCCTTCAATGCACCGGGGATGCCTCAGATGCCACTATCCACTTCTAGTGGATTGGGAGCAGTCATGCAGCCAGAACAACATTCTAGACAGAACTTGGCATATCAAACTCTACCGCAGAGTCAAGTTCAGACCCAACTTCTTAATCCCCAGAGTATTGTCCAAACGAACAATATTCTTCAATCACAACAACCATCCATTCAAAACAATCAACTCCATAGAAGTCTCTCTCAGAACCCACTGCAACAGTTTCAACAGACTATAATTGGGCAAAACCAACCGCAAAATATGATTAGGCCCACTATGCCAGATCATATTAATCAACAGTTGCATATGTCTGATAATCAGGTCCGGCTTCAGTTGTTACAGAAGCTTCAACAGCAACAACAGACACTCTTGTCTCAGCAATCTGCATTGCAGCAGCCTGCTCAGATTATTCAAAACCATGACCAGCAGAGGCAAGAATTAGACGTCACACACAACTCTAGGGCAATAACTCCCCGTCAAGTGTTTGAAATTCCTCATACGCTTCAAAACTCACTGCTCGAGGCTAATTCTATGAACCATCAGATGACAGATCATAGTAGCCAGAACAATGTTCAGTTCTCCCATCCAGCCAAGCAACAAAAGCTTCAACATCAACAACAGCAAACACAACCCGGCTCACTGTCTAAAATGTCTAGTCATGTTGGACTTCCTTCTGCAACTACTGCTAATCAGTTATCTGCTTCCGGTTGCAGTATACGGACTGTAGCAACTGGGACAGTGCCATCGGTAAATACTGATCATGCTCCATCTTGTTCTACTTCGCCTTCCACAAATAACTGTGTTGGTGCGCTTCCTCCAGTGACCACATCCCAGATCCTTATGAGCACAATAGGGGATGACGTTGCTCAGTCTGCTGTGACCATCTTGAGTCAAAGTTCTAATGCAAATGTGGTAAAATATGCACAGCCAAATTATGATGTTAAGCCTTGTTTAAACATTTCCGAAAATCACAACCCAGTGAATTTTTACCCTCAGACTTGCTTGAATGGTGCTGCTATCCAGACAGATTGTTTGGATACGTCGTCTTCTACAACTTCAGTTTGCCTTTCTCAGAGTGATTCACGCTTTCATCAGACTGACAGACCGGTATCTTACTATCCTCAGTCAATGTTTTCTAGAGACAACATTCAAAACGTGGAAGTTCAGGCTGATGCTAGGTGCAATGTTGCATATGGCAACAGCATGAATGGGCAAATGAGAATGCCACTGAATCTAGATTCTACGGTAACCAAAGGCACAGCAAGACTGGGCAAGGATTTGTCAAATGATTTCTCTTCGGGAGGCTTGCTCGGGGGCTATGAAAATAACGGTGATGCCCAGCCAGAACTTTCATCTTCCATGGTTTCACAAACATGGGGAGTCCCTGATATGACCTTTAATTCGATTGATTCCACTATAAATGATAGTGGTTTCTTGGATAGTGGTCCATGGGCTCCGCGGCCGCCGCCACATCAATTTCAACGGATTAGAACATATACCAAGGTATATAAACGCGGAGCTGTGGGAAGGTCCATAGACATAACAAGATATTCAGGTTACGATGAGCTTAAACATGATCTGGCTCGTAGGTTTGGTATTGAGGGACAACTAGAGGATAGACAACGAGTAGGTTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTCAATTGTGTCCGCTGTATTAAAATACTTTCTCCTCAAGAAGTTCAACAGATGAGCTTAGATGGAGATTTTGGCAATGGTGGCCTTCCAAGACAGGCCAGTAGTAGCTCTGATGGTGGGATTGCTTAA 3291 0.4473 MTTTLEEGPSAAIAAVASEGEDKNDGGVNSELWQACAGPLVNLPLPGTHVVYFPQGHSEQVAASLKKDGDVQVPNYSNLPSKLPCTLHSLTLHADSDTDEVYARMTLQPVSSFDMDAILRSDISLKSNKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVIGVSDLDSVRWKNSQWRNLQVGWDEATAGERRSRVSIWEIEPVTAPFFICPPPFFRPKRPRQPGMPDDESFDFSNLFKNTMPWLGDDMCMKDPQAFPGMSLAQWMNIQQNPAMVSSLQPNHVPSMPASVVQNLPGSDIAHQLGFSTQQISQSNNVAFNAPGMPQMPLSTSSGLGAVMQPEQHSRQNLAYQTLPQSQVQTQLLNPQSIVQTNNILQSQQPSIQNNQLHRSLSQNPLQQFQQTIIGQNQPQNMIRPTMPDHINQQLHMSDNQVRLQLLQKLQQQQQTLLSQQSALQQPAQIIQNHDQQRQELDVTHNSRAITPRQVFEIPHTLQNSLLEANSMNHQMTDHSSQNNVQFSHPAKQQKLQHQQQQTQPGSLSKMSSHVGLPSATTANQLSASGCSIRTVATGTVPSVNTDHAPSCSTSPSTNNCVGALPPVTTSQILMSTIGDDVAQSAVTILSQSSNANVVKYAQPNYDVKPCLNISENHNPVNFYPQTCLNGAAIQTDCLDTSSSTTSVCLSQSDSRFHQTDRPVSYYPQSMFSRDNIQNVEVQADARCNVAYGNSMNGQMRMPLNLDSTVTKGTARLGKDLSNDFSSGGLLGGYENNGDAQPELSSSMVSQTWGVPDMTFNSIDSTINDSGFLDSGPWAPRPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYDELKHDLARRFGIEGQLEDRQRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPRQASSSSDGGIA* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3610 1096 CDD B3_DNA 134 226 IPR003340 GO:0003677
Mtr8g3610 1096 Gene3D - 133 236 IPR015300 -
Mtr8g3610 1096 Gene3D - 979 1073 - -
Mtr8g3610 1096 Gene3D - 299 370 - -
Mtr8g3610 1096 SUPERFAMILY CAD & PB1 domains 997 1062 - -
Mtr8g3610 1096 SMART B3_2 135 237 IPR003340 GO:0003677
Mtr8g3610 1096 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Mtr8g3610 1096 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Mtr8g3610 1096 PANTHER AUXIN RESPONSE FACTOR 22 1090 - -
Mtr8g3610 1096 Pfam AUX/IAA family 985 1069 IPR033389 -
Mtr8g3610 1096 MobiDBLite consensus disorder prediction 1075 1096 - -
Mtr8g3610 1096 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 1090 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr8g3610 1096 MobiDBLite consensus disorder prediction 668 708 - -
Mtr8g3610 1096 Pfam Auxin response factor 261 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr8g3610 1096 SUPERFAMILY DNA-binding pseudobarrel domain 125 264 IPR015300 -
Mtr8g3610 1096 ProSiteProfiles PB1 domain profile. 984 1068 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3610 Mtr-Chr8 46696701 46702627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3610 7 484 B3 DNA Binding Superfamily AT1G19220 68.672 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr8g3610 B3 9.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3610 - - gmx:100790644 1496.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3610 8 46696701 46702627 Mtr8g3610 8 46696701 46702627 ECH