Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3566 ATGGAATCAGATTTCGAGACGAACGATATGCTCACACTCTCACAAGATTCATTTGATGATGCCAACGACAATGATAATTTGGATGTTGAAGGTGAAACATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTATTAGATTGCTGTCAGCACTGGTTCTGCTTTGTATGTATTGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATACGATACCATAGGGAGCAATAAAGTTGAAGATGGCTCATTCTTCAGAGATGATGACTGGTCGATTGACGGGAAGAATAACAATCTGTCATTTCCCTCTTACTACATTGATGAAAATGCAGTTACTTGCTTGGATGGTGACGGCTGCAAAATTCGAAATGGATTTGCAAGTGTTGAAGAAGATTCTGGTCTTGATACATCGATTGCTTGCGACTCATGCGATCTATGGTATCACGCCTTTTGTGTGGGATTTGATACTGAAGGTACTTCTGAAAGTACGTGGTTATGCCCAAGATGTGTGGCTGATGCAGTTTCTAAAGAAACAGATGGCAATTCAATAAAGGAGGCTTCCCTGGAATGTAACCCAGATAGTAATAACAGTGAATGTCATGCCGGAATAGTGTCTGTGTCCATTGCTGATACAGGAGAGACAGCTGTGGTTGTCTCAATGGTTGACCGAAACAAATGGATTCCAGAAACAAGTGAGAGAGGCCTATTGCCTCCTGAAGTTGATGGGGATCTGTTGAATGAGCCATGTAAGTTAATGTCGGACACAAATAATCAGCTGCAGGCAACAGAGAAGACAAATGTGTCACCGATTATGAAGGGAGAAGAACTAGAGCTTTCATTATCACACCCAACTTCTAAATCCTTCGTGCATAGCGATTTAAAGGAAAGTGATAATGGAACAAGATGTGAACCGAGTAGCTTTGATGGAACGAAGTTATCTGATGAGTCCAATGCCAAAACTAGTCCATGCAAAATTGAATCTGATATGGGTCTTCATCTTGGTTTATCGGTGGGCTCTTTTTTAACTGTCGATAATGTGGACAAGAGCGAATCAAAAGATCAAGCAACTGATCCCCCGTGCTCGATTCCAGAAGAATTTCCTTTGGAAGGTGATAAACTCGATATCAATGCTTGTGATGACAGTGCCAGAGTGGCTGGTAGAAAGAGGAAGCATTTTGATTACAGTCATGAGCAAGTTCGTATAAAAGTTGAGGATGAAGATGCCAACCCCGAATTATCGGTTGAAGCTTCACAAAAGAAAACCAGAGCAGCTGTTAGTCAGATGTTTAGAGCTAATGACTCGGATGCTCAACTTTCTGACAATGCTAAGAAAAGTCCCGTTTTAAAACATTCTCCAACAAAGGAGATTGCAGCATCAGATATAATGAATATAGTTAAAGGGACGAACCGTAGGCTTACCAAGGGACTTGCTGACACTAATGCTAGTAAAAAGTTAGCTGAAAAGAAAGAAAACATGACTGGGTTGAGGGTTAAAAAGATTATGAAGAGAGTTTCTGATGATGGAGAATCATCCTCACTAGTCCAAAATCTAAGGAAAGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTATAAACTTTGAGGAAAACCATTTTGATAAAAATCTTCTTGAAGCCTTTAGGGCTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCTTCAGCTCTGAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTGCGTGAAAATCTAACAAGGAAAATTTTTGGGACATCCAATGGTAGAAGAAAGCGTGCATGGGATAGGGATTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTTCAAAGCCTGAAAAGGTCGAAACCTTAAAATCAGTTCTTGATCTTCTAAGAAAAAGTTCAGAGAACCCAGAATCAGAGCGAGCTCCTGAATGTCAGGCCAAGAATCCAATTCTTTCCAGATTGTATATAGCAGATACATCTGTTTTCCCACGGAAAGAGGACGTCAAACCTTTCTCGGAGCAGACTAAACAAAATAATCCGTCAGCAAAAGGACCAAATCAATCTGTTGATAACAAGATTATTAAAGCAACAGAGGTAAATAATCTCTTATCAATGACCAGAGTATGTTTATCTGAGAAAAAAGTAGATAAGATTGTACGTGGTCCAGCTGGTAAAGTACAATTAAGCAGTCGCTCGGAAGGGGCATCAGTTTCTTCTTCAGCTGGTGCTAAAGTTGGCACAAAGGATTCTGGCCTTAAATCTGATTCTGTGAAAGGTGATAAAAGAAAATGGGCCTTGGAGGTTCTGGCGAGGAAAACAGCTGTTGCAAGCAAGAACACAGCAAATGAAAGCCAGGAAGATGATGCAATTTTTAAGGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCGGTGTTGGCACCTTGTCGCCACAATAAAATTCCTGTATCCGTGAGGCAGACACAGCTGTACCGCCTGACGGAACGCTTATTGAAGAACACAAATCTGCCAATCATTCGTAGAACTGCAGACACAGAATTGGCTGTTGCAGATGCTATTAATATTGAAAAGGAGGTTGCTGATAGATCAAAAAGCAAGCTAGTTTATCTGAATCTTTGTTCACAAGAGTTATTGCATCGCACAAATAACACAAAATCCAACATAAACACAGACACAACTCTACCAACCTCATCATCACCAGTGCAAACTGATCAATCAGTACTAAATACTGATGATCTTTTGACTGACCCTGCAGTTCAAATAGCATTGAAAAATGCTGGTTTGTTTTCTGATTCACCTCCAAGCAGTCCCCGTAAGAACAATGAAATATGTAATGAAAAGGAAGTGTCAGGGCCTGATGATATACTTGAACTAGAATCTCATCCCGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGATGATTACATAGGTGCCAGTGTTACAAAGATCCCAAAGCTAAAAGAAGAGCCAAGTGAATCAAAAGTGAAACTCGTTTTCTCCACCACGAGCTTGAAGAAAACAAATAATGCTTTGGATAGTGCAGACTGTAAGGGGTCTGAAAACAATGAAGTGCCCGGAGTTGCCTTTTGCTCACCAAACTGTCACAGAGATGCAGTCCAGAAGGATTCTACCATTAATGCAGAGATTGGCCAGCCTTCCGTTTCTTCTGGACTCCTACTATGTGAGGGTGCTGTCGAGCCAGTTGATTCAGAATTTGAAGATTTATACGGCCCTGATAAAGAACCACTTATAAAAAAGTTTCCAGATGGTGAATTACAATCATTACATGGAGAGGGCAAGATGGAAACTCAAAGCGAGAATAATGATTGCCATAAGGAAGAAGAACGTGACTTAGACAAAGCAATAAATGGTGCTGAATTAGGGAATGAGTCTGTCCCTATCATCACTGGCAAACCTCCTAATACATCCGGGACTGATGAAAATATTCAAAGGAAGGAAGAGAGAAGGAAGGAAGAGAGATCTGACATCCCAGCCCAGAAGTCAAACAATGAAAATCAAGTAGCGAAGAAGGTAGAAGCCTACATCAAGGAGCATATCAGGCCATTGTGCAAGAGTGGTGTGATCACGGCTGAACAGTACAGGTGGGCTGTTGCAAAAACAACTGAAAAGGTTATGAAGCATCATTGCAAATCAAAGAATGCTAATTTCCTCGTAAAGGAAGGTGAGAAAGTAAAGAAACTCGCGGAGCAGTATGTTGAAACAGCCCAACAGAATAGAAAAAGTTGA 3813 0.407 MESDFETNDMLTLSQDSFDDANDNDNLDVEGETCGICMDMVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSFFRDDDWSIDGKNNNLSFPSYYIDENAVTCLDGDGCKIRNGFASVEEDSGLDTSIACDSCDLWYHAFCVGFDTEGTSESTWLCPRCVADAVSKETDGNSIKEASLECNPDSNNSECHAGIVSVSIADTGETAVVVSMVDRNKWIPETSERGLLPPEVDGDLLNEPCKLMSDTNNQLQATEKTNVSPIMKGEELELSLSHPTSKSFVHSDLKESDNGTRCEPSSFDGTKLSDESNAKTSPCKIESDMGLHLGLSVGSFLTVDNVDKSESKDQATDPPCSIPEEFPLEGDKLDINACDDSARVAGRKRKHFDYSHEQVRIKVEDEDANPELSVEASQKKTRAAVSQMFRANDSDAQLSDNAKKSPVLKHSPTKEIAASDIMNIVKGTNRRLTKGLADTNASKKLAEKKENMTGLRVKKIMKRVSDDGESSSLVQNLRKEIREAVRNKSSINFEENHFDKNLLEAFRAAITGPKTELVNKLSPSALKAKKSMLQKGKVRENLTRKIFGTSNGRRKRAWDRDCEIEFWKYRCMRASKPEKVETLKSVLDLLRKSSENPESERAPECQAKNPILSRLYIADTSVFPRKEDVKPFSEQTKQNNPSAKGPNQSVDNKIIKATEVNNLLSMTRVCLSEKKVDKIVRGPAGKVQLSSRSEGASVSSSAGAKVGTKDSGLKSDSVKGDKRKWALEVLARKTAVASKNTANESQEDDAIFKGNYPLLAQLPTDMRPVLAPCRHNKIPVSVRQTQLYRLTERLLKNTNLPIIRRTADTELAVADAINIEKEVADRSKSKLVYLNLCSQELLHRTNNTKSNINTDTTLPTSSSPVQTDQSVLNTDDLLTDPAVQIALKNAGLFSDSPPSSPRKNNEICNEKEVSGPDDILELESHPELDIYGDFEYDLEDDDYIGASVTKIPKLKEEPSESKVKLVFSTTSLKKTNNALDSADCKGSENNEVPGVAFCSPNCHRDAVQKDSTINAEIGQPSVSSGLLLCEGAVEPVDSEFEDLYGPDKEPLIKKFPDGELQSLHGEGKMETQSENNDCHKEEERDLDKAINGAELGNESVPIITGKPPNTSGTDENIQRKEERRKEERSDIPAQKSNNENQVAKKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTEKVMKHHCKSKNANFLVKEGEKVKKLAEQYVETAQQNRKS* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 1169 1187 - -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 744 760 - -
Mtr8g3566 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 109 IPR013083 -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 302 333 - -
Mtr8g3566 1270 ProSiteProfiles Zinc finger PHD-type profile. 66 186 IPR019787 -
Mtr8g3566 1270 ProSiteProfiles Zinc finger RING-type profile. 34 73 IPR001841 -
Mtr8g3566 1270 SUPERFAMILY FYVE/PHD zinc finger 149 186 IPR011011 -
Mtr8g3566 1270 PANTHER RING FINGER PROTEIN 41, 151 104 1266 - -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 902 921 - -
Mtr8g3566 1270 SUPERFAMILY RING/U-box 26 79 - -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 1094 1194 - -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 740 771 - -
Mtr8g3566 1270 Coils Coil 528 548 - -
Mtr8g3566 1270 Pfam Ring finger domain 33 73 IPR001841 -
Mtr8g3566 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 190 IPR013083 -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 316 333 - -
Mtr8g3566 1270 PANTHER RING/U-BOX PROTEIN 104 1266 - -
Mtr8g3566 1270 ProSitePatterns Zinc finger RING-type signature. 50 59 IPR017907 -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 945 972 - -
Mtr8g3566 1270 Pfam PHD-finger 148 184 IPR019787 -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 682 706 - -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 688 706 - -
Mtr8g3566 1270 SMART PHD_3 132 184 IPR001965 -
Mtr8g3566 1270 SMART ring_2 34 72 IPR001841 -
Mtr8g3566 1270 MobiDBLite consensus disorder prediction 1095 1145 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3566 29 76 C3H Transcription Factor Family AT2G39100 33.333 6.01e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mtr8g3566 PHD 5.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3566 - - gmx:100808102 1761.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3566 8 46214098 46224093 Mtr8g3566 8 46214098 46224093 ECH