Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3556 ATGGCTTCCATAACTCTAATACTTGTATTTCATGTCTTTATTATTATTATTATTTCCCTACTTCAATCTTCTAAAGGGAAACAAATTATCTGTAACACCTTATCATGTGGTGATATTGTTATTGCTTTCCCTTTCGGTTTAAAAGAAAGTAATCAAGATCCTCTTTGTAGCTATTCTACAAACCCCACTTTCCAACTTTCATGCAACAACCAAAGGCAAACAATTCTCAACCTCCCCAAAACAGATGACTTGATCATTAAAAACATCGATTACATAACCCAAACAATCCATGTTAACGACCCCAAAGGTTGTCTCCCAAAACGGTACTTAGATAACAATTTTAACCTTTCAGATTCAGCTTTTAAATTAAACCCCGAAATTTACAGCACTTATAACCTCACTTTTCTACGTTGTCCTTCAAATGTTACTGAATTGCCATTAGCACCAATCTCTTGCCTAAGAGATAAAGAACATTCAAACTCGTCTTCTTCTCCGGTTATAGTTTCATGGGCACCACCTCCGTTGTCTCAAACGTGTGAGGTGATTTCAACGGCTTTGGTTCCGTTACCGTCGATGGATATTCCTATGTGGCCATGGCCTAATCTTGAAAGTGATGTTGAGTTGGTTTGGACCAAACCACGATGTGGAGACTGTTTACTTGATGGTCAAGTTTGTGGGTTCTCTGAGGAGGATGAAAATAGGCTTCAAGTTGAATGTTTCCCTAGTCCCTCCAATCAAGGCCTCTCAAGAAGTGTGAAATACGGCATAGCAATGGGAGTGGGAATACCAGGACTTTTGTGTCTGATTGGCTTATGTTACAGTATATGTGGTAAGATGAGGAGAACGGTACCACTTTATGAACAAAGGACCTCAAATCTTCCTACAATAACAATTTCCTTAGAACCTCTCCCTTCTTTTGCAATGGGTCTTGATGGTGCCACAATTGAAAAGTACCCCAAGACTCTTATTGGGGAGAGTGGACGTTTATTGAAGGCCAATGACAATACTTGTTCAATTTGTCTATCTGAATATCAACCTAAAGAGACGTTGAGAAGCATCCCTGAGTGCAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGCCCAATATGTAGAAATTCACCAGAGACGTATTCTTCAACGGGTCCTTCTTTTTCTTCATTATTTTTATCCCCTAATTCGTCACCGTTGTCTTCTTCACGATAG 1227 0.3912 MASITLILVFHVFIIIIISLLQSSKGKQIICNTLSCGDIVIAFPFGLKESNQDPLCSYSTNPTFQLSCNNQRQTILNLPKTDDLIIKNIDYITQTIHVNDPKGCLPKRYLDNNFNLSDSAFKLNPEIYSTYNLTFLRCPSNVTELPLAPISCLRDKEHSNSSSSPVIVSWAPPPLSQTCEVISTALVPLPSMDIPMWPWPNLESDVELVWTKPRCGDCLLDGQVCGFSEEDENRLQVECFPSPSNQGLSRSVKYGIAMGVGIPGLLCLIGLCYSICGKMRRTVPLYEQRTSNLPTITISLEPLPSFAMGLDGATIEKYPKTLIGESGRLLKANDNTCSICLSEYQPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPETYSSTGPSFSSLFLSPNSSPLSSSR* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3556 408 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 408 - -
Mtr8g3556 408 SUPERFAMILY RING/U-box 330 385 - -
Mtr8g3556 408 ProSiteProfiles Zinc finger RING-type profile. 337 379 IPR001841 -
Mtr8g3556 408 Pfam Wall-associated receptor kinase galacturonan-binding 31 100 IPR025287 GO:0030247
Mtr8g3556 408 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 408 - -
Mtr8g3556 408 CDD RING-H2_PA-TM-RING 336 379 - -
Mtr8g3556 408 Pfam Ring finger domain 335 379 IPR001841 -
Mtr8g3556 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 384 IPR013083 -
Mtr8g3556 408 SMART ring_2 337 378 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3556 Mtr-Chr8 46142994 46146925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3556 27 382 C3H Transcription Factor Family AT2G25410 35.772 3.60e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3556 - - cam:101497311 519.62