Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3554 ATGTCAACTTTGCCATATTTAATTTCCTTGTTCATCCTCGTATCACTGTTACCCCACAGAACAACAAAAGGTGAAGAGTTCTTCACATGTGAAAGGACAGCATCATGCGAAACCTACGGACTTCCAATTCGGTTTCCGTTTTCATTAAACCAATCAAATCAAACCAATCTTTGTAGTTACCCAGGTTTCGACCTCACGTGCACCAACACCACCACCACCACCTTCAGTGAACCCTTACTCACTCTTCCAAATTCTGAAAGCTTTGTTGTGAAACGCATCTCCTTTGTTGATCAAGTAGTTTGGGTCAACGATCCCAACATTTGCTTCCCAAAACGTTTCATGTTTGACCAAAACAACTTCATGTTAAACCTTAAAGATTCACCGTTTCGGTTAAGTGATTATTACACTTTTGTTAATTTTTCATTCCTAAATTGTCCTTCCAATTCAACCGTAATAAATTTAGTACCACCTATAAGTTGTTTGAATTTAAGCTCTATTAGTAGTATCAACAACGATAAGAACATGAATTATTCGATTGTGGCTATGATGTCTGATCCTCCTTTTGCTACACCATGGACATCATTATGTGAATTTATTTCGTCAACTTTGATACCTGTGGAAGAGACGAATTGGTTGTTTTGGACTGATTATTATTCTAACATACCCTTGCAGTGGGATGATCCTGATTGTGGAAATTGTGAAGCACGTGGAGGAAGATGTGGATTGGTTGGGGATGATGCTCTTCGTCTTGCTTGTTATGATCTTCCCACCCAAGGTCTTTCAAGGAAAGTCAAGTATGGTTTAAGCCTAGGTTTGGGAATACCTGGACTCCTAGGTCTAATTATGCTTACATTGATGTTATGCAAAAACAAGTACACAAGGAATCAAGTACAACGTCAAACAAGCACTGAATTTTCAACCTTTATTATGACGCACCCCCCGATTTTCGTTATGGGCCTCGACGGGGCAACAATCGAAAGATACCCTAAAACCCAGCTTGGTGAAAGTGGACGATTGCCTAGGCCTAGTGACAACACTTGCTCTATATGTCTTTGTGAGTATCAGCCAAATGAAGTATTGAGGACAATTCCTGAGTGTAATCACTATTTTCATGTGAATTGTATAGATGGATGGCTCAAGACAAATGCTACCTGCCCTTTGTGTCGAAATTTTCCAGAGAGATCTACTTCATTTTCTTCGGTTTTGCCTGTATCTCCAACTTCTTAA 1227 0.3953 MSTLPYLISLFILVSLLPHRTTKGEEFFTCERTASCETYGLPIRFPFSLNQSNQTNLCSYPGFDLTCTNTTTTTFSEPLLTLPNSESFVVKRISFVDQVVWVNDPNICFPKRFMFDQNNFMLNLKDSPFRLSDYYTFVNFSFLNCPSNSTVINLVPPISCLNLSSISSINNDKNMNYSIVAMMSDPPFATPWTSLCEFISSTLIPVEETNWLFWTDYYSNIPLQWDDPDCGNCEARGGRCGLVGDDALRLACYDLPTQGLSRKVKYGLSLGLGIPGLLGLIMLTLMLCKNKYTRNQVQRQTSTEFSTFIMTHPPIFVMGLDGATIERYPKTQLGESGRLPRPSDNTCSICLCEYQPNEVLRTIPECNHYFHVNCIDGWLKTNATCPLCRNFPERSTSFSSVLPVSPTS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3554 408 SMART ring_2 347 388 IPR001841 -
Mtr8g3554 408 Pfam Wall-associated receptor kinase galacturonan-binding 30 104 IPR025287 GO:0030247
Mtr8g3554 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 393 IPR013083 -
Mtr8g3554 408 ProSiteProfiles Zinc finger RING-type profile. 347 389 IPR001841 -
Mtr8g3554 408 SUPERFAMILY RING/U-box 342 391 - -
Mtr8g3554 408 Pfam Ring finger domain 345 389 IPR001841 -
Mtr8g3554 408 CDD RING-H2_PA-TM-RING 346 389 - -
Mtr8g3554 408 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 9 400 - -
Mtr8g3554 408 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3554 Mtr-Chr8 46136005 46137134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3554 35 392 C3H Transcription Factor Family AT2G25410 33.333 8.37e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3554 - - mtr:MTR_8g099495 799.66