Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3535 ATGGCCGACGTAGTTGCCGAGATCCCCATCCCCACAAAGAAATCAAGAGGAAGCAGAAAGGCTCTCAAGGAGAAACCATCGACCAATGATGCCAACATCATAGCTGGGGAGGCAACTATTTCTCCCATTTCTGAGAATCTTTCTAACCCTAAGAAGGGTAAAGCTGCATCAAAGAAACAACAAAATCCAAAGGAACGATCTTTCGAGCAAGATTTGCTCGAGATGCAGGAAAAGATGGAGCAGTTGCGTCTCGAGAAAGAGAAGACCGAGGAGCTGTTGAAAGCCAAAGATGAGATCTTGAAGCAAAAGGATGAAGAACTCGAGAATCGTGGCAAGGAGCTTAAGAAATTGCAGAAATTGAAAGAATTCAAACCCACCATGAATTTGCCTATGGTGAAAGACAAGGAACAAGAGAAGAAGGAAAAGAAAAAGAATGGGTGCCCTGAGAAGAAAAGGCCTTCCTCAGCATACATGTTATGGGTCAAAGATCAATGGCATGAGGTTAAGAAGGAAAATCCAGAGGCAGAATTTAAGGACATTTCAAACATTTTGGGGACTAAATGGAAGACAGTTAGTGAAGAAGAGAAGAAGCCTTATGAGGAGAAATACCAAGCTGAAAAAGAGGCTTATTTGCAAGTAATTACAAAGGAAAAACGTGAAATTGAGGCAATGAAACTCTTAGAAGAGGAACAGAAGCAGAAGACTGCTATGGAATTGCTTGAACAGTTTATGCAATTCAAACAAGATGCAGAAAAGGAGAGCAAGAAGAACAAGAAAGAGAAGGATCCATTGAAACCAAAGCATCCTATGTCAGCTTTTTTCCTGTTTACTAATGATAGAAGAGCAGCTATTCTTGCAGACAACAAGGGTATCTTGGAGGTTTCCAAGATAACGGCTGAAGAGTGGAAAAACATGACAGAAGAACAAAAAAGGCCTTATGAAGAGATTGCAAAGAAGAACAGGGAGCAATATGCTCAAGAAATGGAGGCTTACAAACAGAAGAAAGATGAGGAGGCTGCAAATCTTATGAAGGAAGAGGAAGAACATATGAAACTTCAGAAACATGAAGCCTTGCAATTGCTCAAGAAAAAGGAAAAAACTGAAAACATGATCAAGGAAACAAAATTGAATCGGCAGAAGAAGAAACATAACAAGGAAGAAAAGAATTCTGATCCAAACAGGCCTAAAAGACCTGCATCCTCGTATATTCTTTTCAGCAAAGAAGCAAGGAAGAGTATACTGGAGGAACGTCCAGGAGTAGGAGGAAACATGCTTAACACACTTATTTCAATGAAGTGGAAGGATATGAGTGAGGAAGATAAACAATTGTGGAATGGCAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAAATGGAGGAATACAACAAATCTATTGTTGCAAAGCTGGAGCAGAAAACCAATGAGTAA 1431 0.4011 MADVVAEIPIPTKKSRGSRKALKEKPSTNDANIIAGEATISPISENLSNPKKGKAASKKQQNPKERSFEQDLLEMQEKMEQLRLEKEKTEELLKAKDEILKQKDEELENRGKELKKLQKLKEFKPTMNLPMVKDKEQEKKEKKKNGCPEKKRPSSAYMLWVKDQWHEVKKENPEAEFKDISNILGTKWKTVSEEEKKPYEEKYQAEKEAYLQVITKEKREIEAMKLLEEEQKQKTAMELLEQFMQFKQDAEKESKKNKKEKDPLKPKHPMSAFFLFTNDRRAAILADNKGILEVSKITAEEWKNMTEEQKRPYEEIAKKNREQYAQEMEAYKQKKDEEAANLMKEEEEHMKLQKHEALQLLKKKEKTENMIKETKLNRQKKKHNKEEKNSDPNRPKRPASSYILFSKEARKSILEERPGVGGNMLNTLISMKWKDMSEEDKQLWNGKASEAMDAYKKEMEEYNKSIVAKLEQKTNE* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3535 476 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 10 472 - -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 58 73 - -
Mtr8g3535 476 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 10 472 IPR044601 GO:0003677
Mtr8g3535 476 MobiDBLite consensus disorder prediction 118 150 - -
Mtr8g3535 476 CDD HMG-box 150 212 - -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 32 56 - -
Mtr8g3535 476 CDD HMGB-UBF_HMG-box 266 329 - -
Mtr8g3535 476 Pfam HMG (high mobility group) box 266 332 IPR009071 -
Mtr8g3535 476 Pfam HMG (high mobility group) box 395 463 IPR009071 -
Mtr8g3535 476 Pfam HMG (high mobility group) box 151 212 IPR009071 -
Mtr8g3535 476 SMART hmgende2 265 333 IPR009071 -
Mtr8g3535 476 SMART hmgende2 149 219 IPR009071 -
Mtr8g3535 476 SMART hmgende2 394 464 IPR009071 -
Mtr8g3535 476 SUPERFAMILY HMG-box 253 339 IPR036910 -
Mtr8g3535 476 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 395 463 IPR009071 -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 248 267 - -
Mtr8g3535 476 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 150 218 IPR009071 -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 360 403 - -
Mtr8g3535 476 SUPERFAMILY HMG-box 139 212 IPR036910 -
Mtr8g3535 476 Coils Coil 445 476 - -
Mtr8g3535 476 Coils Coil 214 234 - -
Mtr8g3535 476 Coils Coil 357 384 - -
Mtr8g3535 476 Coils Coil 65 120 - -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 118 153 - -
Mtr8g3535 476 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 266 332 IPR009071 -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 360 375 - -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 1 73 - -
Mtr8g3535 476 Gene3D High mobility group box domain 249 347 IPR036910 -
Mtr8g3535 476 Gene3D High mobility group box domain 132 240 IPR036910 -
Mtr8g3535 476 Gene3D High mobility group box domain 377 474 IPR036910 -
Mtr8g3535 476 SUPERFAMILY HMG-box 390 465 IPR036910 -
Mtr8g3535 476 MobiDBLite consensus disorder prediction 248 269 - -
Mtr8g3535 476 Coils Coil 314 355 - -
Mtr8g3535 476 CDD HMG-box 395 460 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr8g3535 HMG_box 1.3e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3535 K09273 - gmx:100783033 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3535 8 45958166 45960791 Mtr8g3535 8 45958166 45960791 ECH