Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3526 ATGCCCAAACAACCTTCTACACCTCCTCCCATTCCCAACATCATCAAACACACTCATCACTTCACACAAATCAACAACATCATGCCAAAAACTATACAAATACGTTACACCGACCCTGACGCCACGGATTCTTCTTCTGACGAAGAAGAAAATCCAATACATTCCAATATTACCCCTCGCCGCAGAATCAAAACTTTCATCCACGACATTGTGATCGAAAAAGAAACCATTTCAAATAAAAGAAAAAACCCTAACACCAGAGTTAAAACCAAAACTCCGGCGACTCAACGGCGGCCGGTGATTTACACCGGGAAGAAATATCGTGGAGTGAGACAGAGACCTTGGGGAAAATGGGCGGCGGAGATAAGAGACCCCAAACTCAAATTTCGACGGTGGTTGGGAACTTACAACACTGCTGAAGAAGCTGCTATGGAGTATGATAAAGCCGCCATTGAAATACGTGGTGCAGACGCGCTTACGAATTTCATTCAACCCACGACAAAGAAGGTTGTTATAAACTCCAGCAGCGATGAATGCGTTGTTTCTGCCACGTCAGTACTTCAATGTTGTACTTCTTCCTCAGAAGGAGGTGAATCCGTAACAGTAAAAGACAATGTTATCGTTCCAATGAGTACTGAATCTTTACGTGAATGTGAAAATGAATGTTCGTCTGTGTCTGGGAATTTGTTTGACAATGATTTAGTAAAATCTGAGTCAGTTTTTCCGATTCCTAATGATACGTTATTTGATGAGTTTGGAAACATGTTCTTATTCCATGATGATTTGAGTGGAAGTTTTGTCGATACTTCGATTAATAGTTTGGATTTAGGTTTCACAGAATGGAACAGAGATTATGGTGATTTCCAGGATATTGGGGATTTGTTTGGTTCGGATCCTGTTACTGCTGTTTTGTTTGATGAAGAAATGAGCCAAGTTTTGTAA 942 0.4087 MPKQPSTPPPIPNIIKHTHHFTQINNIMPKTIQIRYTDPDATDSSSDEEENPIHSNITPRRRIKTFIHDIVIEKETISNKRKNPNTRVKTKTPATQRRPVIYTGKKYRGVRQRPWGKWAAEIRDPKLKFRRWLGTYNTAEEAAMEYDKAAIEIRGADALTNFIQPTTKKVVINSSSDECVVSATSVLQCCTSSSEGGESVTVKDNVIVPMSTESLRECENECSSVSGNLFDNDLVKSESVFPIPNDTLFDEFGNMFLFHDDLSGSFVDTSINSLDLGFTEWNRDYGDFQDIGDLFGSDPVTAVLFDEEMSQVL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3526 313 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Mtr8g3526 313 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Mtr8g3526 313 Gene3D AP2/ERF domain 105 164 IPR036955 GO:0003700|GO:0006355
Mtr8g3526 313 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Mtr8g3526 313 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 299 - -
Mtr8g3526 313 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF2 16 299 - -
Mtr8g3526 313 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Mtr8g3526 313 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Mtr8g3526 313 CDD AP2 105 162 IPR001471 GO:0003700|GO:0006355
Mtr8g3526 313 MobiDBLite consensus disorder prediction 37 59 - -
Mtr8g3526 313 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3526 Mtr-Chr8 45885028 45886190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3526 15 303 AP2-EREBP Transcription Factor Family AT4G23750 36.283 1.82e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Mtr8g3526 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3526 - - mtr:MTR_8g099215 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3526 8 45885028 45886190 Mtr8g3526 8 45885028 45886190 ECH
Mtr5g0257 5 2374481 2376433 Mtr8g3526 8 45885028 45886190 PCT