Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g3524 | ATGAACGACGGTGATGTCTCTAAGCAAATCCACCAGATGGTGAGATTTATCCGTCAAGAAGCTGAAGAAAAAGCCAGCGAGATCTCTCTCTCTGCTGAAGAGGAATTCAATATCGAGAAGCTTCAGTTGGTTGAAGCTGAGAAGAAGAAGATCAGACAAGAATATGAGCGAAAAGAGCGCCAAGTTGAAATTCGAAAGAAAATTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAATGTTCTTCAAGCTCAAGATGACATTGTTAATTCAATGAAAGAAGTTACTGCCAAGGAACTTTTGAATGTGAGCCGTCATCACCTGGTTGAAGATATTTTACATGTGGGCAATCATGAGTACAGAAACCTTCTAAAAGGTCTCATTGTTCAGAAACATGACGTGCACTTGGTAGAACATGTGCTGGATGCAGCTGCACAGGAGTATGCTGAAAAAGCAGGTGTTTATCCACCAGAGATCATTGTTGACCACAGTGTCTATCTTCCCCCTGCACCCAAGCATCACAATACTCACGAACCTTACTGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGGCTGGATGTAGTGTTCCGTAAAAAGCTTCCGGAGATCCGAAAGCAGCTCTTTGGACAAGCTGCTGCTTGA | 678 | 0.4381 | MNDGDVSKQIHQMVRFIRQEAEEKASEISLSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRINVLQAQDDIVNSMKEVTAKELLNVSRHHLVEDILHVGNHEYRNLLKGLIVQKHDVHLVEHVLDAAAQEYAEKAGVYPPEIIVDHSVYLPPAPKHHNTHEPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQAAA* | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g3524 | 225 | PANTHER | ATPASE H+-TRANSPORTING V1 SUBUNIT E1A-RELATED | 1 | 225 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Mtr8g3524 | 225 | Coils | Coil | 38 | 61 | - | - | |
| Mtr8g3524 | 225 | Hamap | V-type proton ATPase subunit E [atpE]. | 8 | 221 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Mtr8g3524 | 225 | Pfam | ATP synthase (E/31 kDa) subunit | 16 | 220 | IPR002842 | GO:0033178|GO:0046961|GO:1902600 | |
| Mtr8g3524 | 225 | PANTHER | ARCHAEAL/VACUOLAR-TYPE H+-ATPASE SUBUNIT E | 1 | 225 | - | - | |
| Mtr8g3524 | 225 | Gene3D | - | 94 | 224 | IPR038495 | - | |
| Mtr8g3524 | 225 | SUPERFAMILY | V-type ATPase subunit E-like | 107 | 221 | - | - | |
| Mtr8g3524 | 225 | Gene3D | - | 1 | 62 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr8g3524 | Mtr-Chr8 | 45853291 | 45857520 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g3524 | 1 | 225 | Primary Pumps ATPases(2) | AT4G11150 | 66.250 | 4.75e-107 | 306 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g3524 | K02150 | - | gmx:100500452 | 352.058 |
Event-related genes