Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3517 ATGGGGGGCAACTGCAGCACCGGCGCCGGCGCCGGAATCAACACCACAACCACCACCCCCCATTCCGATCCTCCACCCAAAAACGCCCCAACAATCCTCCCACAAAACTTCACTCCCTCACCCCCTCAACCACCCTTACCCACCACCACCCTCGGCCGCATCCTGAACCGTCCAATGGAAGACGTTCGCTCCATCTTCATCTTCGGCCGTGAACTCGGCCGAGGCCAATTCGGCGTTACATATTTAGTAACCCACAAAGTTACCAAAGAACAATTCGCTTGTAAATCAATCGCTACACGTAAACTCGTCAACCGTGACGATATCGATGATGTCCGCCGCGAGGTTCAAATCATGCATCATCTGACCGGTCATCGTAACATTGTTGAACTCAAAGGTGCTTATGAGGATAAACACTCTGTTAACCTTGTTATGGAGCTTTGTGCTGGTGGTGAACTTTTTGATCGGATTATTCTCAAAGGACATTACTCTGAACGTGCTGCTGCTAATCTTTGTCGTCAGATTGTTACGGTTGTTCATAATTGTCATACTATGGGAGTTATGCATAGGGACTTGAAACCTGAGAATTTCTTGTTTCTTGGTAAAGAAGAAAATTCGCCTCTCAAGGCCACGGATTTTGGTCTCTCTGTGTTTTTCAAGCCAGGAGACGTGTTTAAAGATCTTGTTGGGAGTGCATATTATGTTGCTCCTGAAGTGCTGCGCAAAAGTTATGGGCCTGAAACTGATATTTGGAGCGCCGGAATTATATTATATATTCTGCTTTCTGGTGTCCCCCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTTCGTGGACAAATTGATTTTGCGTCGGATCCTTGGCCTTCTATATCAAGCAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAAATGACGCTAAAGAACGGATATCAGCAGTTGAAGTACTCAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGATATTGCTGTTTTGAGCAGAATGAAACAGTTCCGAGCAATGAACAAGCTAAAGAAAGTAGCTTTAAAGGTTATCGCCGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATGGATACAGACAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGCCTCCCTAAACTCGGTAGTAAAATGTCAGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGACGTGGACGGTAATGGAACCATCGATTATATTGAGTTTATAACCGCTACCATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAGTATTTTGACCAAGATAAGAGCGGGTACATCACAAAGGAAGAGTTGGAATCTGCCCTTAAGAAGTATAATATGGGCGACGAGAACACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAACGATGCAAGAATTAACTATGATGAGTTTGTAGCTATGATGAGGAAAGGCAACCCAGATATAACCCACAGGCGTCGCAAATAA 1551 0.4417 MGGNCSTGAGAGINTTTTTPHSDPPPKNAPTILPQNFTPSPPQPPLPTTTLGRILNRPMEDVRSIFIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLVNRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDKHSVNLVMELCAGGELFDRIILKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLGKEENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRKSYGPETDIWSAGIILYILLSGVPPFWAENEQGIFDAILRGQIDFASDPWPSISSSAKDLVKKMLRNDAKERISAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKMSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDQDKSGYITKEELESALKKYNMGDENTIKEIIAEVDTDNDARINYDEFVAMMRKGNPDITHRRRK* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3517 516 Gene3D Phosphorylase Kinase; domain 1 68 151 - -
Mtr8g3517 516 MobiDBLite consensus disorder prediction 1 52 - -
Mtr8g3517 516 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 33 509 - -
Mtr8g3517 516 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Mtr8g3517 516 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Mtr8g3517 516 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Mtr8g3517 516 Gene3D - 332 509 - -
Mtr8g3517 516 MobiDBLite consensus disorder prediction 1 22 - -
Mtr8g3517 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Mtr8g3517 516 SUPERFAMILY EF-hand 363 504 IPR011992 -
Mtr8g3517 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 33 509 - -
Mtr8g3517 516 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Mtr8g3517 516 SMART serkin_6 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3517 516 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Mtr8g3517 516 CDD STKc_CAMK 66 323 - -
Mtr8g3517 516 MobiDBLite consensus disorder prediction 23 48 - -
Mtr8g3517 516 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Mtr8g3517 516 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Mtr8g3517 516 Pfam Protein kinase domain 69 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3517 516 Pfam EF-hand domain pair 442 504 IPR002048 GO:0005509
Mtr8g3517 516 Pfam EF-hand domain pair 372 432 IPR002048 GO:0005509
Mtr8g3517 516 SUPERFAMILY Protein kinase-like (PK-like) 66 325 IPR011009 -
Mtr8g3517 516 SMART efh_1 371 399 IPR002048 GO:0005509
Mtr8g3517 516 SMART efh_1 407 435 IPR002048 GO:0005509
Mtr8g3517 516 SMART efh_1 443 471 IPR002048 GO:0005509
Mtr8g3517 516 SMART efh_1 478 506 IPR002048 GO:0005509
Mtr8g3517 516 ProSiteProfiles Protein kinase domain profile. 66 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3517 516 Gene3D Transferase(Phosphotransferase) domain 1 152 331 - -
Mtr8g3517 516 ProSiteProfiles EF-hand calcium-binding domain profile. 475 509 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3517 Mtr-Chr8 45755992 45761256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3517 52 516 EF-hand Containing Proteins AT4G23650 79.570 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr8g3517 Pkinase 5.8e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3517 K13412 - gmx:100777096 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3517 8 45755992 45761256 Mtr8g3517 8 45755992 45761256 ECH
Mtr5g0268 5 2492218 2497368 Mtr8g3517 8 45755992 45761256 PCT