Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3498 ATGGGTCAGCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGTCTTTGGTCCCCTGAAGAAGATGAAAAACTCATCACTTACATTACCACTCATGGCTATGGCTGTTGGAGTGAAGTTCCTGACAAAGCTGGGCTTCAAAGGTGTGGTAAGAGTTGTCGATTAAGATGGATAAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGATGAGGAGAAGTTAATTATTAGCCTTCACAGTGTTGTTGGCAACAGATGGGCTCACATTGCAAGCCACTTACCTGGTAGAACAGACAATGAAATAAAGAATTACTGGAATTCTTGGATCAAAAAGAAAATAAGAAAGCATTCATCAAGCTCTAATTCAACCACCAATAATGTTACACAAAATGTTGTTCATCATTCCCACCTCAATTATAATTATTCTAATATAAAATTAGACCAGTTTGCCAACCAAGAGAATATAACAACAGCAAAACCACCAGAAACAACCTTGTTTTCTCCCACATGCCCTATTTTTATGTTTGAGCCTAGTGATTCACTTCATGGAACAACAACAGAAAGCAGTTGTAATCTGCAAACCGATCAATACTTCCAAGATTCTATAAATGGTTTGAGCTCTGAAACATGGAATCAAGTCCAGTCATCACTACCTCCTCCAATATCAACAACTTTTTCAATGGACACAATGAATTATCTACCACCTTTGATAGAGAATGTGGAAAACATGGATGAGGAAGGAGATCATAGAGGAGTACTAGAATGCTTGCAGGGTCACTGGGTAGAAGAAACACATCAACAGTGTCCTAATAACTTTCTTTTCTGGGACAATATTGTTCAAGGGCATGGACTTGGTGGGGAAGAACAACTGCCACCAAATTCATCAAATATGGGAACAAACAGCTTTCTGAAACTTGCAGGGATTCTTCTTTTCCTTTTGAGGATGATCTTTTTCAATTTTCTCTGTCCCTTTTGA 984 0.3831 MGQHSCCNQQKVKRGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHSVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHSSSSNSTTNNVTQNVVHHSHLNYNYSNIKLDQFANQENITTAKPPETTLFSPTCPIFMFEPSDSLHGTTTESSCNLQTDQYFQDSINGLSSETWNQVQSSLPPPISTTFSMDTMNYLPPLIENVENMDEEGDHRGVLECLQGHWVEETHQQCPNNFLFWDNIVQGHGLGGEEQLPPNSSNMGTNSFLKLAGILLFLLRMIFFNFLCPF* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3498 327 CDD SANT 69 112 IPR001005 -
Mtr8g3498 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr8g3498 327 PANTHER MYB DOMAIN PROTEIN 55 1 304 - -
Mtr8g3498 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr8g3498 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr8g3498 327 PANTHER MYB TRANSCRIPTION FACTOR 1 304 - -
Mtr8g3498 327 CDD SANT 17 61 IPR001005 -
Mtr8g3498 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr8g3498 327 Gene3D - 6 66 - -
Mtr8g3498 327 Gene3D - 69 141 - -
Mtr8g3498 327 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mtr8g3498 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr8g3498 327 SMART sant 13 63 IPR001005 -
Mtr8g3498 327 SMART sant 66 114 IPR001005 -
Mtr8g3498 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3498 Mtr-Chr8 45479364 45481733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3498 1 291 MYB Transcription Factor Family AT1G63910 47.091 4.52e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g3498 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3498 K09422 K02947 gmx:100803556 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3498 8 45479364 45481733 Mtr8g3498 8 45479364 45481733 ECH
Mtr5g0277 5 2604402 2606679 Mtr8g3498 8 45479364 45481733 PCT