Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3495 ATGGATGTGTTATTGTTATTACTACCTTTGTTGGTTGCTTTGCCAAGCTTGTCTATAGTTGAGAGCCGCAAAACACCGGTTGAGGACTACTATTTTGAGTATTGTGCTGTGAGCTGCAGAGCTTACAGTGCCTCAGTGACAGAATTTGGAGCGGCCGGCGATGGAAATACTTTGAACACAAAAGCTTTTCAGTCAGCCATAGATCATTTGAGTCAGTACTCATCAAATGGTGGTTCTCAACTATATGTTCCACCAGGAAGATGGTTGACTGGTAGCTTCAATCTCACCAGTCATTTCACTTTATTCCTACACAAAGATGCTGTCATTCTTGGTTCTCAGGATGAAAGTGAATGGCCGGTGATTGATCCCTTGCCGTCTTATGGTAGAGGGAGGGACACTCAGGGTGGAAGGTATAGCAGTCTAATTTTTGGAACCAACCTCACTGATGTTGTCATAACAGGGAACAATGGCACACTAGATGGACAAGGTGAACTGTGGTGGCAAAAGTTTCACAAGGGGAAGCTCACTTATACTAGGCCTTACCTGATTGAAATCATGTACTCGGATAATATACAGATATCCAATCTTACTTTGGTTAATTCTCCATCCTGGAATGTCCATCCTGTTTACAGCAGCAACATTATTGTTCAAGGCATCACAATTCTTGCTCCTGTGAATTCACCAAATACAGATGGGATCAACCCTGACTCTTGTACGAACACGCGAATTGAGGACTGTTATATAGTGTCTGGGGACGACTGTGTGGCCGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACTAAGCAGCTGGTAATAAGAAGACTCACTTGTATTTCTCCAACCAGTGCTGTGATTGCTTTAGGGAGCGAAATGTCTGGTGGGATTCAAGACGTCAGGGCCGAGGACATTGTGGCGATCAATTCGGAATCAGGAGTTAGGATCAAAACTGCTGTTGGAAGAGGAGGATATGTCAAGGACATATATGTTAGAAGAATGACTATGAAAACCATGAAATGGGCATTTTGGATGACAGGAGATTATGGTTCTCACGCTGATAACAACTATGATCCTAATGCAATTCCTGTGGTTCAGAATATTAATTATCGCGATATGGTTGCTGAAAATGTGACTATGGCAGCAAAGTTGGAGGGTATATCTAATGCACCATTTACTGGAATCTGCATATCTAATGTAACCATTGGATTAGCAAAGAAGGCTAAAAAACTTCCATGGAATTGCACCTATATTGCTGGGGTTTCAAGTGGTGTGACTCCTGCGCCATGTGGCCTGTTGCCAGACCAAGGAGTTGAGAAAATTGGGCCATGCGCCTTCCCAGAAGACAATTTGCCCATTGATGATGTACAGGTTCAAACGTGTACTTATAGAAGGAATTTTTGA 1413 0.4296 MDVLLLLLPLLVALPSLSIVESRKTPVEDYYFEYCAVSCRAYSASVTEFGAAGDGNTLNTKAFQSAIDHLSQYSSNGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILGSQDESEWPVIDPLPSYGRGRDTQGGRYSSLIFGTNLTDVVITGNNGTLDGQGELWWQKFHKGKLTYTRPYLIEIMYSDNIQISNLTLVNSPSWNVHPVYSSNIIVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPTSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGDYGSHADNNYDPNAIPVVQNINYRDMVAENVTMAAKLEGISNAPFTGICISNVTIGLAKKAKKLPWNCTYIAGVSSGVTPAPCGLLPDQGVEKIGPCAFPEDNLPIDDVQVQTCTYRRNF* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3495 470 Gene3D - 28 424 IPR012334 -
Mtr8g3495 470 SUPERFAMILY Pectin lyase-like 36 438 IPR011050 -
Mtr8g3495 470 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 6 467 - -
Mtr8g3495 470 Pfam Glycosyl hydrolases family 28 136 420 IPR000743 GO:0004650|GO:0005975
Mtr8g3495 470 Pfam Pectate lyase superfamily protein 45 101 IPR024535 -
Mtr8g3495 470 PANTHER PECTIN LYASE-RELATED 6 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3495 Mtr-Chr8 45461738 45464639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3495 32 468 Glycoside Hydrolase AT4G23500 75.057 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3495 - - gmx:100785841 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3495 8 45461738 45464639 Mtr8g3495 8 45461738 45464639 ECH
Mtr8g3495 8 45461738 45464639 Mtr8g0742 8 8921348 8922664 ECH