Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3493 ATGGCTAGACAACTTTGTCATGAAGATGACAAAACATCAAGTGGTGGATTTTGTTACAACCCAACGATTCAAACACAAATCCAAGGTTTTGTGTCCGATCCAGAGATGTTCAATCTCACAACAGGGATGGAGATGATAGGTTTTTCCAAACAACATCTTCAACAACATAGTACTGACACAACAAACTCTGTCATGTGGAAAACAAATTTCTCAGGAAAACTAAGTCAACAACATGTTGGTCCTTCCTCTTCTTCAAAAACCATGAATGATAATTTCTATCATCATCAAGATTTCACTGTTTCTGATACAACAAGTAGTGATCAGAATCTAAACAACATGGTTCATCATGATTCATCTTCACATCATCAGTGGCAACAAGTTGATGATTCATCTTTAAGATGTGTTTTCCCTTGTGAAGGTAATGAAAGACCAAGTCAAGGACTTTCACTCTCTCTTAGTTCAACAAACCCTTCCTCTATTGGTTTACAATCTTTTGAACTAAGACATACTACTAATCATCATTTGCAAGATCAAGGGTATCAAGGTCATTTTCTTCTCAAAAACTCTAAGTTCTTACTTCCAGCACAAGAACTTCTCAATGAGTTTTGTAGTTTAGAAAGTACTAAGCAAAATGATTTAGTTTTACAAAAGCAAAAATCTCAAAAGTTCAACAACAAGCAAAGTTGGGAAGATGATAACAACAATGGTGGTAGCAGTTCTTCAATCAAACAATCTTTAACCTCTGTAGAGTTTGTTGAATTGCAGAAGAGAAAAACTAAGCTCCTTTCCATGCTAGAAGAGGTTGATAGAAGGTACAAACACTATTGTAATCAAATGAGGAGTGTGGTTTCATCATTTGAAGCTGTAGCTGGAAATGGAGCTGCGAAAGTATATTCAGCTTTGGCTTTAAAAGCTATGTCAAGACATTTTAGGTGTTTGAAAGATGGAATTTTAGAACAAATTCAAACAACAAGAAAAGCAATGGGAGAAAAAGACCCTGTTGCACCTGGAACAACAAAGGGTGAAACACCTAGGCTTAAAATACTTGACAGAGTTTTGAGACAACAAAGAGCATTTCAACAAATCAACATGATGGAAACACATCCTTGGAGACCTCAACGTGGTCTTCCTGAACGTTCTGTTTCAATTCTCAGGGCTTGGCTTTTTGAACACTTTCTTCATCCGTACCCAAGCGACGTTGATAAGCATATTTTGGCCCGCCAAACCGGTCTCTCAAGAAGCCAGGTATCAAATTGGTTTATTAATGCAAGAGTGAGACTATGGAAGCCAATGGTGGAAGAAATGTATTTGGAAGAAGAGAAAGAGCAACAAAGAAACACGACAACCTCGGACGGAGGAAACAATATTAATCATGAAGAGGATAATCTTAATGTACTTCAAAACCAATCTCAAACTCAACCTCACGAGGATCAAAAGCCACGACTCCTTCGAATCGATTCTGAATGTGTCTCGTCTATCATCAACAATGATCATAAAAATGATGCTAATAATAAGAATTTGAATCATCATCAATTAGCCGCGGATGCGTTTGGCTCGGTTGATATTGATTTTTCATCTTATAATACGCATCATTCTTCTTCTGACATGGTTGCTGCTTACACAAGTGGTGAGAGTTTCCACCAAGGTGGCAGCAGTGGTGGAGTGTCATTGACGTTAGGGTTACAACAACATGGTGGAAATGGAGTTAGTTTGGCTTTCCCACCAACATCACAGAGTCCAATGTTCTATACCAGGGACCAAATTGAAGAACCGGTTCAGTACTCTCTTTTGGATGGTGAAGGAACAAATATTATGCCATACAGGAATCTCATGGGGACACAATTGCTACATGACTTGGCATAA 1863 0.3806 MARQLCHEDDKTSSGGFCYNPTIQTQIQGFVSDPEMFNLTTGMEMIGFSKQHLQQHSTDTTNSVMWKTNFSGKLSQQHVGPSSSSKTMNDNFYHHQDFTVSDTTSSDQNLNNMVHHDSSSHHQWQQVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRHTTNHHLQDQGYQGHFLLKNSKFLLPAQELLNEFCSLESTKQNDLVLQKQKSQKFNNKQSWEDDNNNGGSSSSIKQSLTSVEFVELQKRKTKLLSMLEEVDRRYKHYCNQMRSVVSSFEAVAGNGAAKVYSALALKAMSRHFRCLKDGILEQIQTTRKAMGEKDPVAPGTTKGETPRLKILDRVLRQQRAFQQINMMETHPWRPQRGLPERSVSILRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEQQRNTTTSDGGNNINHEEDNLNVLQNQSQTQPHEDQKPRLLRIDSECVSSIINNDHKNDANNKNLNHHQLAADAFGSVDIDFSSYNTHHSSSDMVAAYTSGESFHQGGSSGGVSLTLGLQQHGGNGVSLAFPPTSQSPMFYTRDQIEEPVQYSLLDGEGTNIMPYRNLMGTQLLHDLA* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3493 620 SMART prehox3 180 319 IPR006563 -
Mtr8g3493 620 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 578 - -
Mtr8g3493 620 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
Mtr8g3493 620 MobiDBLite consensus disorder prediction 439 459 - -
Mtr8g3493 620 Gene3D - 373 435 - -
Mtr8g3493 620 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 2 578 - -
Mtr8g3493 620 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Mtr8g3493 620 CDD homeodomain 370 431 IPR001356 GO:0003677
Mtr8g3493 620 SUPERFAMILY Homeodomain-like 371 436 IPR009057 -
Mtr8g3493 620 SMART HOX_1 370 434 IPR001356 GO:0003677
Mtr8g3493 620 Pfam Associated with HOX 186 317 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3493 Mtr-Chr8 45426735 45430291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3493 112 620 Homeobox Transcription Factor Family AT5G41410 46.655 2.20e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mtr8g3493 POX 2e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3493 - - mtr:MTR_8g098815 1206.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3493 8 45426735 45430291 Mtr8g3493 8 45426735 45430291 ECH