Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3491 ATGGGATTTCCAGTAGGTTACACAGAACTTCTCTTCCCAAAATTAGTTCTTCACCTTTTATCCATCTTCACTTTCATACGAAAACTCATCAACACCATTTTCCGCTACATGGGTCTCCCCGATTTCATCGAACCCGACATTATATGGCCCGAAAATTCAACTCGAATACCCGAATTCGAATCCGTTTCAGCTCTTCTTATCCGTGAAATCCTTCCAGTTGTAAAATTCATGGAGCTGGTGGACCCACCCGAAAGCTGCGCTGTATGTCTTACTGAGTTCGAGGAAAACGATGAGATCAGACGGTTAGCGAATTGTAGACACATTTTCCATCGAGGTTGTTTGGACCGTTGGATGGGATATGATCAAAGAACGTGTCCTTTGTGTAGAACACCATTCATACCTGATGAGTTGCAAAGTGCTTTCAATGAGAGATTATGGGCTGCTTCTGGGATCCCTGAATTTCATTCTGCTGAGGATGTTCTTTCTTTGTAG 492 0.4309 MGFPVGYTELLFPKLVLHLLSIFTFIRKLINTIFRYMGLPDFIEPDIIWPENSTRIPEFESVSALLIREILPVVKFMELVDPPESCAVCLTEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDELQSAFNERLWAASGIPEFHSAEDVLSL* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3491 163 PANTHER BRH1 RING FINGER PROTEIN 1 156 - -
Mtr8g3491 163 SMART ring_2 86 128 IPR001841 -
Mtr8g3491 163 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Mtr8g3491 163 Pfam Ring finger domain 85 129 IPR001841 -
Mtr8g3491 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 132 IPR013083 -
Mtr8g3491 163 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 156 - -
Mtr8g3491 163 CDD RING-H2 86 129 - -
Mtr8g3491 163 SMART ringv_2 85 129 IPR011016 GO:0008270
Mtr8g3491 163 SUPERFAMILY RING/U-box 71 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3491 Mtr-Chr8 45383752 45384753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3491 1 150 C3H Transcription Factor Family AT1G63840 59.355 6.76e-61 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3491 K16281 - rcu:8287413 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3491 8 45383752 45384753 Mtr8g3491 8 45383752 45384753 ECH
Mtr5g0284 5 2646752 2647601 Mtr8g3491 8 45383752 45384753 PCT