Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3488 ATGTCTTCGGAACTATATTCATTCGGCACCACAACTTTCCACACACATTCAACCTCAGAAATAGTCTCTTCAAATGATGGAAGTGGAGACCTTCCATTTTTCTCAGACTCTTTCCCTTTTTTCACCAATTCTCATCACAGTACTAATGAAGTAACTTCTCAACAAAATTCAAACCCATTTGATGAACCTCTTCTTCCTTCTCTAGACCCTTTTTCACCTTCTTTTTTCTCTTTCTCTCCTCCAACTGATCAAAACCACACTACAGTGCAGCCTCTTTGTAATGAAAGTTTCTCAGCTTTTGATTTTTCCCAAGTTAAAAACGAGGAATCACAAATAAGTATTGATTATTATAACTACAATACTAATACTAATAATAATCAATTCCTTCCTCATAGTTACAGTGGTGATGAGAATGTATCAAAGTACATGCAAAGAAGCTTCAGCAGTAACTCTTTCGAAAAGAAGCCTAGTTTTCTATTCCAAACTCACCATGATAATCTCGTTGATTCATCAAAATTTCAAAGGCATGATTTAAGCTCTCCTGAAAATAGTTTGAGAAGGGTTTGTAGCACAGGTGATTTGCAGAACATGAAAGAAAATAATATGTCTCCAACAGAGGGGAATTTGCAAGAGGAACAAAATTTCAAAGTAGGTCGTTATAGTGCGGAAGAAAGAAAAGAAAAAATTTCCAAGTACAGAGCTAAGAGAACACAGAGGAACTTCAACAAGACCATTAAGTATGCATGTCGAAAGACACTAGCAGACAATCGACCACGCGTACGTGGCAGGTTTGCACGCAATGACGAGCCCACAGAGATTCCTAAGGCTCCATGTTTAATCAGAGATGAAGACGAAGTCGATTTCTGGATGGAAGAATTGCGGTTGCATGAAGATGATGTAACAGTGGGAGTAGCAGAACAATATCTGAAGAGTAGTGGTTACGGAGTTGGTCAATTTCAGTACTTTGGGTTATGA 975 0.3795 MSSELYSFGTTTFHTHSTSEIVSSNDGSGDLPFFSDSFPFFTNSHHSTNEVTSQQNSNPFDEPLLPSLDPFSPSFFSFSPPTDQNHTTVQPLCNESFSAFDFSQVKNEESQISIDYYNYNTNTNNNQFLPHSYSGDENVSKYMQRSFSSNSFEKKPSFLFQTHHDNLVDSSKFQRHDLSSPENSLRRVCSTGDLQNMKENNMSPTEGNLQEEQNFKVGRYSAEERKEKISKYRAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEPTEIPKAPCLIRDEDEVDFWMEELRLHEDDVTVGVAEQYLKSSGYGVGQFQYFGL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3488 324 Pfam CCT motif 225 267 IPR010402 GO:0005515
Mtr8g3488 324 PANTHER CCT MOTIF FAMILY PROTEIN 27 321 - -
Mtr8g3488 324 ProSiteProfiles CCT domain profile. 225 267 IPR010402 GO:0005515
Mtr8g3488 324 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 27 321 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3488 Mtr-Chr8 45352346 45354562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3488 221 269 C2C2-CO-like Transcription Factor Family AT5G57660 48.980 6.70e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr8g3488 CCT 4.2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3488 - - gmx:102665661 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3488 8 45352346 45354562 Mtr8g3488 8 45352346 45354562 ECH
Mtr5g0285 5 2649420 2651752 Mtr8g3488 8 45352346 45354562 PCT