Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g3484 | ATGGGCGGTTGTTGCTGTTGTGCTTCCAAAGAGACTGTATTGAGCGCTGCACCTGCTTACTATTATTACCCAAGAGCATCAGAGGAGCATGTTCCACTATCTTCTCAACCGGGTGCTCCCTCTGGTGGAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGTCCTGATACTTATAGACCACCTCCTGCTCCTCTCCCTTTCAATTTAACATCAGGAGCCACTCAGACTGCACCTGTGACTCAAGAGATTTCCCGTGACAAGAACAACACATCCTCGCTTTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGACAATCACGGAACCTCACCTAAGTCGGAAGAACCGAAGGAATCAGAATGCAAAGGTCAGACTGATATAGAACAGGACACAGCAAAGGATTCTGAAATTGAACTTTCAAAGTTGGGAGAACCTATAAATTTAGTAGAAGAGGATACATGCCCGATATGTTTAGAAGAATATGATGCTGAAAATCCAAAACTCACTACTCAATGTGGCCATGACTTTCACCTTGCTTGCATTCTGGAGTGGATGGAAAGAAGTGAAACTTGCCCTGTTTGTGATCAGGTTACGGTTTTCAGCACTCCCATTGAATAG | 624 | 0.4375 | MGGCCCCASKETVLSAAPAYYYYPRASEEHVPLSSQPGAPSGGRLLVDTNLDTSSPDTYRPPPAPLPFNLTSGATQTAPVTQEISRDKNNTSSLSTNSNSVQEPSGDNHGTSPKSEEPKESECKGQTDIEQDTAKDSEIELSKLGEPINLVEEDTCPICLEEYDAENPKLTTQCGHDFHLACILEWMERSETCPVCDQVTVFSTPIE* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g3484 | 207 | MobiDBLite | consensus disorder prediction | 69 | 109 | - | - | |
| Mtr8g3484 | 207 | MobiDBLite | consensus disorder prediction | 30 | 136 | - | - | |
| Mtr8g3484 | 207 | Pfam | Ring finger domain | 154 | 196 | IPR001841 | - | |
| Mtr8g3484 | 207 | ProSiteProfiles | Zinc finger RING-type profile. | 156 | 197 | IPR001841 | - | |
| Mtr8g3484 | 207 | PANTHER | ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN | 1 | 207 | - | - | |
| Mtr8g3484 | 207 | SMART | ring_2 | 156 | 196 | IPR001841 | - | |
| Mtr8g3484 | 207 | MobiDBLite | consensus disorder prediction | 110 | 136 | - | - | |
| Mtr8g3484 | 207 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 207 | - | - | |
| Mtr8g3484 | 207 | SUPERFAMILY | RING/U-box | 147 | 203 | - | - | |
| Mtr8g3484 | 207 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 133 | 202 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr8g3484 | Mtr-Chr8 | 45316597 | 45319623 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g3484 | 1 | 207 | C3H Transcription Factor Family | AT5G41350 | 49.296 | 4.61e-60 | 185 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g3484 | - | - | gmx:100790079 | 317.39 |