Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3483 ATGGCAAATGGGTCTTTCCTTGATCGTCTAGAAGCTGAATTTCATGGAAACGGCGGTTGTATTGTTGAGTATCGGGCTGATCGTGACAAAGCTAAACAGAAATCTTTGTTTTGTCAAATTTTTTCGGTTTACCTAAAGGAGAATTGTAGTAGAGGCATTGTGAGGCCAATGCCGGTGATGCTCGGTGATGGTCCGTTGCTTGATTTATATCAACTGTTCTTCCTTGTGAAGGAAAAAGGTGGGTATGATGCGGTATCGAGAAAAGGGCTGTGGGATTCTGTGATAATTGAAATGGGTTTTAACCTTCATGTTTTGGCATCCGTGAAATTAGTTTATGAAAAATATCTGAGTGATTTTGAAGGTTGGCTCAGCAAAACATTTGAAGAGAGGAGTTTAAAAAATGGGAATCATGGGTATTTGAATTCATTGCCGATAGATCTAGAAAAAGAATTTCGAAGCCTTTTATGCTCAAATCTAAAGGACAACGATGATGATTTTGTCCCATTAGAATCGAGTAACATCATAAAGCGCATTGAATTTGTTAACCACAAGAGTGATGGTTATTTATTGGACACTAATTACCAAAATAACAAATGGGAGGGTGTCCAAAATGTTGACGGTGATGATATTGATGATGACGAAAAATTCGGCAATGGTGTTGAGGATTATCTAGCTGCGTCTTGTGTGGAAATCTCTGAGAAGGAATTTAATTCTCGCAAACGTAAACGGGAATCGTTATCAGGAATGGTAAACTGGACACGGCATATCGCAAAACATCCGCTTGATCCTGTAGCTCCACCATTACCAGAACCATCAAGGTGGAAGCAGTATAAAGGAGGCCAGGACTTTTTTGTTCAGTTGCTGAGGGCAAGGGATGTTCTGTCTGTGAGAAAGCAGGCTGAACCAAACGGTGGATCATCTTCCCAGAAGGTGAAGATGCATCCTGCCATGTATGAGGATCAAGTTGCTCTTGGTCACCAAGGTACAGTGAAATTGAGATATAGTGAAAGGCTTCCTGTCTCTGTTAAATCTCGCTGCCTTTGCTGCAATTCATGTTCTGGTAAGGGAAATAAATTGCACGGATCAGTCAATATGGAGTCAGAAATATGTCCTCTGGAGAAAACAACTGCCAAACCAGACGTCGTCACTGAAAAGAAAAAATCTACTGCCAAACCAGATGCAACTGAGAAGAGAAAATCAACTGCCAACCCAGATGTTACTGAAAAGAGAAAATCTGAGCCATCTATGGATGATGATTTTCGTGAAAAGCTTGTTTCCGTAGGTCACCTGTTCCAAGCGGAAGTTCCGGAGTGGACTGGTATAGTTTCTGAGAGTGACTCTAAATGGTCAGGCACACAAGTATGGCCTGTTAAAGATGATTCAAAACCTACTACCGAAACAGATCTTGTTGGGAGAGGAAGACGAGGAAGGTGTAGCTGCAACGTTCAAGGTTCTGTTGACTGTGTCAGATTCCATATTGCTGAGAACAGGATGAAGCTGAAGCTTGAATTGCATTCCGTGTTTTATCATTGGGGATTTGATAAAATGGGTGAGGAAGTTTCACTTCGATGGACAGCTGATGAAGAAAAGAGATTTAAGGATGCAATGAGGTTAAAATTCCCCTCCCAAAACAAGTCTTTTTGGAACAATCCTTCCAGATACTTTCGAAACAAGACAAGAAAAGACATGGTGAGCTATTACTTCAATGTATATCTTATTCAACTAAGAAGTTATCAGAATCGAGTGACCCCGAAGACTGTTGACAGCGACGATGACGAAGTTGAATTTGGATCTTTTGGTGATGGTTTTGGGAGGGAAGCTATGAAGCATCCATATATGGATTACTTGGAGTGTTCAGAGAACAAGCAATGCTTTGACTTTGAGTAG 1887 0.4096 MANGSFLDRLEAEFHGNGGCIVEYRADRDKAKQKSLFCQIFSVYLKENCSRGIVRPMPVMLGDGPLLDLYQLFFLVKEKGGYDAVSRKGLWDSVIIEMGFNLHVLASVKLVYEKYLSDFEGWLSKTFEERSLKNGNHGYLNSLPIDLEKEFRSLLCSNLKDNDDDFVPLESSNIIKRIEFVNHKSDGYLLDTNYQNNKWEGVQNVDGDDIDDDEKFGNGVEDYLAASCVEISEKEFNSRKRKRESLSGMVNWTRHIAKHPLDPVAPPLPEPSRWKQYKGGQDFFVQLLRARDVLSVRKQAEPNGGSSSQKVKMHPAMYEDQVALGHQGTVKLRYSERLPVSVKSRCLCCNSCSGKGNKLHGSVNMESEICPLEKTTAKPDVVTEKKKSTAKPDATEKRKSTANPDVTEKRKSEPSMDDDFREKLVSVGHLFQAEVPEWTGIVSESDSKWSGTQVWPVKDDSKPTTETDLVGRGRRGRCSCNVQGSVDCVRFHIAENRMKLKLELHSVFYHWGFDKMGEEVSLRWTADEEKRFKDAMRLKFPSQNKSFWNNPSRYFRNKTRKDMVSYYFNVYLIQLRSYQNRVTPKTVDSDDDEVEFGSFGDGFGREAMKHPYMDYLECSENKQCFDFE* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3483 628 CDD ARID 50 120 - -
Mtr8g3483 628 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 27 628 - -
Mtr8g3483 628 ProSiteProfiles ARID domain profile. 31 124 IPR001606 GO:0003677
Mtr8g3483 628 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 27 628 - -
Mtr8g3483 628 SMART bright_3 32 125 IPR001606 GO:0003677
Mtr8g3483 628 SUPERFAMILY ARID-like 29 124 IPR036431 GO:0003677
Mtr8g3483 628 Gene3D - 21 133 IPR036431 GO:0003677
Mtr8g3483 628 Pfam ARID/BRIGHT DNA binding domain 44 120 IPR001606 GO:0003677
Mtr8g3483 628 MobiDBLite consensus disorder prediction 379 417 - -
Mtr8g3483 628 MobiDBLite consensus disorder prediction 452 471 - -
Mtr8g3483 628 SMART ARID_2 28 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3483 Mtr-Chr8 45302556 45308304 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr8g3483 ARID 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3483 - - mtr:MTR_1g073530 803.127