Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3450 ATGGATGGGAGAGAGGCTATGGCATTTTCTGGTGGCCCTGGTTCATATTACATGCATAGAGGAGGGGCTGGTGTTGCAGGGTCTGGTTCTGGAGGGTTCCAATTACCCCCTCCTGGATTCAGACCTTTGCCAAACACTGGCATTATAGCTCAGCCAAATGCTAGGGGTCAGGGTGGTGACACTAGTTCCATGTTTTCATTGGAGACTCAGTCTCATAACTCTCATGCCAATTTTAATCATGGCATTAACATTGGTGCATCTTCTGGGGCACCTTCTAGTGACCCTGTGAAAAAGAAAAGAGGGAGACCCCGGAAATATGGTCCGGATGGATCGGTTTCTTTGAAACTTTCTCCAACGTCTGCCCCTGCAAAATCCACTCAGGAGGATTCAACTACACCTTCTGAGAAACGGGGTAGAGGTCGCCCTCGTGGATCTGGAAGGAAGCAACAGCTAGCTGCATTAGGTGACTGGATGACCAGTTCAGCAGGGTTGGCTTTTTCGCCTCATGTTATCACCATTGGGGTTGGTGAGGACATTGCAGCAAAGCTATTGTCTTTATCACAGCAGAGACCAAGGGCTCTGTGCATCTTGTCGGGCAATGGGATAGTTACTTCAGTTACTCTGCGACAACCTGCCTCTACCAACATTGGTGTAACTTATGAGGGAAAATTCCAAATATTAAGCTTGTCTGGTTCTTACTTGGTTGCTGAAGACAGTGGACCATCCAATAGAACAGGAGGCATAAGTGTTTCTCTTTCTAGTCGTGATGGTCATGTTATTGGTGGCAGTGTTGCTAAGCTTATTGCTGGAAGTCTAATACAGGTGGTTGTATGCAGTTTTGTATATGGTGGTGGCTCGAAGGTTAAGACTAAGCAAGAGACCGCTGCCAATGGTGAAAGTTCTGAACCTCATAACGATGATAAGCTAGCTTCTCCAGCCAGTGCTCCACCTGGTCAAAACTACGTCTCTTCTCTTACAGGCATGTGGCCCGGATCACAGCCATCTGACGTGAAAAGCGTGCACGCACATACTGGCTTTGACTTGACAAGAGGATGA 1056 0.4763 MDGREAMAFSGGPGSYYMHRGGAGVAGSGSGGFQLPPPGFRPLPNTGIIAQPNARGQGGDTSSMFSLETQSHNSHANFNHGINIGASSGAPSSDPVKKKRGRPRKYGPDGSVSLKLSPTSAPAKSTQEDSTTPSEKRGRGRPRGSGRKQQLAALGDWMTSSAGLAFSPHVITIGVGEDIAAKLLSLSQQRPRALCILSGNGIVTSVTLRQPASTNIGVTYEGKFQILSLSGSYLVAEDSGPSNRTGGISVSLSSRDGHVIGGSVAKLIAGSLIQVVVCSFVYGGGSKVKTKQETAANGESSEPHNDDKLASPASAPPGQNYVSSLTGMWPGSQPSDVKSVHAHTGFDLTRG* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3450 351 CDD DUF296 168 280 IPR005175 -
Mtr8g3450 351 MobiDBLite consensus disorder prediction 28 151 - -
Mtr8g3450 351 MobiDBLite consensus disorder prediction 316 339 - -
Mtr8g3450 351 Gene3D - 168 297 - -
Mtr8g3450 351 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 351 - -
Mtr8g3450 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 166 285 - -
Mtr8g3450 351 MobiDBLite consensus disorder prediction 292 351 - -
Mtr8g3450 351 MobiDBLite consensus disorder prediction 50 90 - -
Mtr8g3450 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 351 IPR039605 GO:0003680
Mtr8g3450 351 ProSiteProfiles PPC domain profile profile. 160 302 IPR005175 -
Mtr8g3450 351 MobiDBLite consensus disorder prediction 113 129 - -
Mtr8g3450 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 168 281 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3450 Mtr-Chr8 45026349 45030359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3450 1 351 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.663 5.47e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3450 - - gmx:100813888 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3450 8 45026349 45030359 Mtr8g3450 8 45026349 45030359 ECH
Mtr5g0296 5 2759800 2763821 Mtr8g3450 8 45026349 45030359 PCT