Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3429 ATGTGGGGATGGATGATAAGGGAAGGCCGGACGGCATCATCAGCAGCATCATGGTCACTAACAGCCTGGAACCTCCGTCTCCTCCGTAACATGGGTGGCGGTCCTCGCACCTTCCCCGGCGGCGTAAGCAAATGGAAATGGAAACGTATGCACGAAAAACGCGCCAAAGAGAAACAGCGTAACCTTCTCGAACAAGAGAAACAACTCTACCAAGCTCGTATTCGATCTCACATTCGCTCCACTCTCTCACCTTCTTCATATTCATCTTCCTCCACCACTCATAATCCTATTTCCCCTGATCAACACATCAAAGCCCTCGCCGATCGTTTCATGAAAGACGGTGCTCTAGATCTCTGGAACGACCTCGACGGCCCTGAAACCTACCAGACCCAAACCCAAGCCCAGGCCCAGATTCAATCCCAAGCATCGCCGCAAATTGATTTACGCAGTCGGAATTTGAATAACTATTCACAAATTAGGGGCTACCGTTCTGTTCCTGAGGTTAAGGATTCTATTCGTTCCGTTCCTAGGGTTAGGGATTTGAGTGATCAGAATAGGGTTGGGACGGAAAAGCCTGAACGGCGAAAAATTTGGAGAAAGAATGATTCTTCGAGTGATAGTGATAGTGAGAGTGAAGTGGAATCAAAGAATGAGGGGTACTATTCTAAGGTGGGTAGTATTGCTGCTTTGGGGAAATATGATGTGAAGAGGGTGAGGAGAATGAAGCCTAAGGATTTTGATGATCAAACTGATTTTTCGGAGCAAGTTGAGTTGATTAAGAATGAGCTTAAGAAGAAGAAGTTGAGTCGCCACGAGGAGGAGAATCAGGGTCAGGGACTTGAAAATGTTCTTAGTCAGACAAGATTTGACGAGTGTGCTATATCACCATTGACAATCAAAGCACTTTCTACATCTGGTTACACTCATATGACCCGGGTTCAAGAGACTAGCCTCCCTATTTGTCTTGAGGGTAATGATGTTATGGTCAAGGCTAAAACTGGCACTGGAAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAAGACCTCTCATCGTGCACCGCCAATATATGTTCTTATTCTATGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTTTGCTTAAATATCACGATGGTGTAGGGGTGCAGACTCTAGTTGGAGGTGTACGATTTAAAGTTGACCAGAAACGCCTTGAATCGGATCCATGCCAGATGCTTGTTGCTACACCTGGTAGGTTACTGGATCATATTGAGAATAAGACCGGAATATCTGTACGAGTGATGGGCTTGCAGATGCTTATACTTGACGAAGCTGATCATTTGCTGGACCTTGGGTTTCGAAAGGATATAGAAAAAATTGTTGACTGTTTACCCCGTCAAAGACAATCCTTACTGTTTTCTGCAACTATCCCAAAGGAGGTCCGTCGAGTATCTCAGCTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGTTGTGTGGAAACTCCTGTTCAGGTAAAGCAATCCTATCTTATCGCTCCACATGAATCACACTTTCAGATAGTACATCATATCTTGAAAGAGCATATCTCGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATAACTGGGATGGTGACATCACTCACATATCACCTTCTTCGGGATATGAAACTGAATGTTAGGGAGATACATTCTCGAAAACCTCAGCTGTATCGAACTCGTGTATCAGATGAGTTTAAGGAATCCAAACAAATGATTCTTGTCTCCTCTGATGTTACATCACGTGGAATGAATTATCCTGATGTTACTTTAGTGATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATACATCGTCTTGGAAGAACGGGACGGGAAGGCAAAGAAGGGAAAGGCATATTGTTGATTGCACCTTGGGAAGAGTACTTTTTAAATGAGATCAAGGATCTCCCTCTAGAAAAATTTCCCTTACCAGATTTAGATCCTCAGGCACAGCTTAAGATTGAGCAGTCAATGGCAAAGATTGATAATGACATCAAAGAAGCAGCCTATCATGCTTGGCTTGGTTATTATAACTCCATCAGGGAAATTGGGAGGGAGAAGAGCACAGTAGCTGAGCTAGCAAGCCAATTTTCCGAATCAATTGGTTTACAGAGGCCGCCTTCTCTCTTCCGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGATAG 2271 0.4342 MWGWMIREGRTASSAASWSLTAWNLRLLRNMGGGPRTFPGGVSKWKWKRMHEKRAKEKQRNLLEQEKQLYQARIRSHIRSTLSPSSYSSSSTTHNPISPDQHIKALADRFMKDGALDLWNDLDGPETYQTQTQAQAQIQSQASPQIDLRSRNLNNYSQIRGYRSVPEVKDSIRSVPRVRDLSDQNRVGTEKPERRKIWRKNDSSSDSDSESEVESKNEGYYSKVGSIAALGKYDVKRVRRMKPKDFDDQTDFSEQVELIKNELKKKKLSRHEEENQGQGLENVLSQTRFDECAISPLTIKALSTSGYTHMTRVQETSLPICLEGNDVMVKAKTGTGKTAAFLLPAIETVLKAMSSKTSHRAPPIYVLILCPTRELASQIAAEAKVLLKYHDGVGVQTLVGGVRFKVDQKRLESDPCQMLVATPGRLLDHIENKTGISVRVMGLQMLILDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSATIPKEVRRVSQLVLKREHKYVDTVGMGCVETPVQVKQSYLIAPHESHFQIVHHILKEHISQTPDYKVIVFCITGMVTSLTYHLLRDMKLNVREIHSRKPQLYRTRVSDEFKESKQMILVSSDVTSRGMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKEGKGILLIAPWEEYFLNEIKDLPLEKFPLPDLDPQAQLKIEQSMAKIDNDIKEAAYHAWLGYYNSIREIGREKSTVAELASQFSESIGLQRPPSLFRKTALKMGLKDIPGIRIRR* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3429 756 SMART ultradead3 306 517 IPR014001 -
Mtr8g3429 756 SMART helicmild6 559 640 IPR001650 -
Mtr8g3429 756 Coils Coil 48 75 - -
Mtr8g3429 756 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 266 755 - -
Mtr8g3429 756 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 34 125 - -
Mtr8g3429 756 MobiDBLite consensus disorder prediction 176 217 - -
Mtr8g3429 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 318 501 IPR014001 -
Mtr8g3429 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 676 IPR001650 -
Mtr8g3429 756 PANTHER RNA HELICASE 266 755 - -
Mtr8g3429 756 PANTHER RNA HELICASE 34 125 - -
Mtr8g3429 756 MobiDBLite consensus disorder prediction 80 99 - -
Mtr8g3429 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 658 IPR027417 -
Mtr8g3429 756 Coils Coil 256 276 - -
Mtr8g3429 756 Pfam Helicase conserved C-terminal domain 534 639 IPR001650 -
Mtr8g3429 756 MobiDBLite consensus disorder prediction 176 218 - -
Mtr8g3429 756 Pfam DEAD/DEAH box helicase 311 489 IPR011545 GO:0003676|GO:0005524
Mtr8g3429 756 Gene3D - 511 737 IPR027417 -
Mtr8g3429 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 287 315 IPR014014 GO:0003724
Mtr8g3429 756 CDD SF2_C_DEAD 516 649 - -
Mtr8g3429 756 Gene3D - 249 502 IPR027417 -
Mtr8g3429 756 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3429 Mtr-Chr8 44856577 44860940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3429 287 665 Eukaryotic Initiation Factors Gene Family AT3G19760 26.835 4.25e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3429 - - gmx:100808520 1036.94