Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3415 ATGTTTTTTTTAGCACTCTTTGGTGCAGCATCTTGTGTTATGGAGTGGAGTAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGATCAAGGAACCTTAAACAACATAGAAACAATGGATGGTTCAATTAGGAGGTTTGGAGATTACAGAACAAAAGGAGATTTTTCTGTTGATTTGAAGCTTGGCCATGTTGGAAATTCTAGCACTGAATCAGGGCTAACAAAGTCCAAAGATGTTGGTGGATTTACCAAAATGACATCTTCATCATCATCAACTTCAGGGTCATCTAAGAGAGCTAGAGCTATTAACAATGGGACTCAGATAGTTTCATGTCTTGTGGATGGTTGTCAAGCTGATCTTAGTAACTGTAGAGACTATCATAGGCGTCATAAGGTCTGTGAACTTCATTCCAAGACTGCACAGGTCACAATTGGTGGACATAAGCAAAGGTTCTGCCAGCAATGTAGCAGGTTCCATGCTCTAGAGGAATTTGATGAAGGAAAGAGGAGCTGTAGGAAACGCTTAGATGGTCACAACCGACGGAGAAGAAAACCACAACCAGAACCTATTACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGCACCCAATTGCTGCCATTCTCAAGTTCACATGTATACCCTTCTACTGCTATGATGAATCCTACTTGGGTTGGAGGAGATGTTAGGCTCCATAGCCACAATCAACACCAACAAATGCACCATCTGGTCGATAAACAAGACCTTTTTCTTGGAACAACATCTTCAACCAGCAGCTACAAAGAAGGGAAACAAGTCTCATTCATACAAAATAACCAGCCAACAGCAGCAGCCACTATGAACAATCAACCTCTTCCAGCTTCATCCATGAGTCGCACGTTTAGCAGGACCAATCCTTTTTCAGAAAGATACAAAATGTTTTGTGACAACAACACTTCTTGTGCTCTCTCTCTTCTGTCATCACCAGTACCACAAACACATGATCATCCTGAAAATGGATTGAATCAGATGGTGAATACTCACTCATCTTTTATGCAACCCTTAGGCTTGAGTTTGCATGACCATAGCTTGGGGTCTGTGGACTCAGTTTTGGGTTCAAATGATCAGAGTGGTCATTGTTCCTCAATGTATAACATGGGTTCTAGTGAATCCCATTCTCAGGGGAATAATAATGAAGCTTCTCCATTATTTCCTTTTCAATGGGATTAG 1212 0.4101 MFFLALFGAASCVMEWSNLKAPSWDLTEMDQGTLNNIETMDGSIRRFGDYRTKGDFSVDLKLGHVGNSSTESGLTKSKDVGGFTKMTSSSSSTSGSSKRARAINNGTQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHALEEFDEGKRSCRKRLDGHNRRRRKPQPEPITRSSSFLSNYQGTQLLPFSSSHVYPSTAMMNPTWVGGDVRLHSHNQHQQMHHLVDKQDLFLGTTSSTSSYKEGKQVSFIQNNQPTAAATMNNQPLPASSMSRTFSRTNPFSERYKMFCDNNTSCALSLLSSPVPQTHDHPENGLNQMVNTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQSGHCSSMYNMGSSESHSQGNNNEASPLFPFQWD* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3415 403 MobiDBLite consensus disorder prediction 68 100 - -
Mtr8g3415 403 Gene3D - 103 173 IPR036893 GO:0003677|GO:0005634
Mtr8g3415 403 Pfam SBP domain 112 185 IPR004333 GO:0003677
Mtr8g3415 403 MobiDBLite consensus disorder prediction 176 197 - -
Mtr8g3415 403 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 23 403 - -
Mtr8g3415 403 SUPERFAMILY SBT domain 110 191 IPR036893 GO:0003677|GO:0005634
Mtr8g3415 403 ProSiteProfiles Zinc finger SBP-type profile. 109 186 IPR004333 GO:0003677
Mtr8g3415 403 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 23 403 IPR044817 GO:0003677
Mtr8g3415 403 MobiDBLite consensus disorder prediction 375 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3415 Mtr-Chr8 44753838 44758059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3415 14 281 SBP-box Gene Family AT5G50670 48.432 3.51e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mtr8g3415 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3415 - - cam:101507938 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3415 8 44753838 44758059 Mtr8g3415 8 44753838 44758059 ECH
Mtr8g3415 8 44753838 44758059 Mtr3g3500 3 48862903 48866603 PCT