Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3413 ATGCATGCATCCTACATCCTTTTTTCCCATTATATACAACACATGCATGATTTTTGTTATAGTCCTTTACGTACTACCTTTCTTATTACTTCAAAACCAATGGAGAAACATGAAGTGTTACTCCCTATCTCATCTTCACCAGATGCTTCTCCTTTTAATGTTAAACCCGGTAATGGCTCTAATATTCATGTTAAAATAGCAGAATATCTAAAAACTAAAAAGAAGGAGACTTCAAGCCAGAAAGGAGGCAAAGAAATAATGAAGCACAAATATGTATTTCAAACAAGGAGTCAGATTGATATACTAGATGATGGTTTCCGGTGGAGAAAGTATGGGGAAAAGATGGTGAAAGACAACAAATTCCCTAGAAGTTACTACAAATGCACTTATCAAGGCTGCAAGGTAAAGAAACAAATCCAAAGGCACTCCAAAGATGAGCAGGTCGTGGAAACAAGTTATGAAGGGATGCATATTCACCCTGTAGAGAAGTCAGCTGAAAGCTTCGACCAGATCTTGAGAAACTTCATTACTAACAATCAACTATGA 546 0.3663 MHASYILFSHYIQHMHDFCYSPLRTTFLITSKPMEKHEVLLPISSSPDASPFNVKPGNGSNIHVKIAEYLKTKKKETSSQKGGKEIMKHKYVFQTRSQIDILDDGFRWRKYGEKMVKDNKFPRSYYKCTYQGCKVKKQIQRHSKDEQVVETSYEGMHIHPVEKSAESFDQILRNFITNNQL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3413 181 Pfam WRKY DNA -binding domain 103 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr8g3413 181 Gene3D WRKY domain 87 162 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr8g3413 181 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 34 177 - -
Mtr8g3413 181 SMART WRKY_cls 102 161 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr8g3413 181 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 34 177 IPR044810 GO:0003700
Mtr8g3413 181 SUPERFAMILY WRKY DNA-binding domain 94 161 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr8g3413 181 ProSiteProfiles WRKY domain profile. 97 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3413 Mtr-Chr8 44722094 44723467 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3413 90 172 WRKY Transcription Factor Family AT5G13080 69.880 2.69e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr8g3413 WRKY 4.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3413 - - gmx:100127378 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3413 8 44722094 44723467 Mtr8g3413 8 44722094 44723467 ECH