Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3398 ATGGATAAGCTGAATTTTATTAAAAATGGAGTGAGTAGATTGCCTCCTGGTTTTCGTTTCCAACCAACAGATGAAGAGCTTGTGTTTAATTATTTGAAATGTAAAATCTTCTCATGCCCCTTGCCTGCTTCCATCATTCCTGAGGTCAATGTTTGCAAGTATGATCCTTGGGATTTGCCAGGAGGTTGTGATGAACAAGAGAGGCACTTTTTTAGCTCCAAGGAAGCAAAGTATAGAAATAGTAATCGGATGAGTAGAACAACAAAATGTGGATATTGGAAGGCAACAGGGTCAGACAAAAAAATTTCATCTTCAACTTGTAATGGCATTGCAGGGCTAAGAAAAACTCTAGTTTTCTATGAAGGGAAATCCCCAAATGGGTCTAGAACTGATTGGATCTTGCATGAATATCGCCTCATCAATGTAGAAACTACTAACAACTCAGCTCAGAACTATGGAAATGAGATAGGAGAATGGGTTCTGTGTCGGTTATCTGTAAGGAAAAGAAGTGGATTAGAATATGGAAGCACTAGTACTCCTAATTCAAGATTAATGTTTGATTTTATGATGGTAAACAACAAGACATGTTCTTCTACATCCTCTTCATGCTCAAGTTCCAGTAATAACATTGAGGTCTCTTCAAATGTACAAGATCATGAACAAGACTATGCTGATCATTTTTAA 684 0.3713 MDKLNFIKNGVSRLPPGFRFQPTDEELVFNYLKCKIFSCPLPASIIPEVNVCKYDPWDLPGGCDEQERHFFSSKEAKYRNSNRMSRTTKCGYWKATGSDKKISSSTCNGIAGLRKTLVFYEGKSPNGSRTDWILHEYRLINVETTNNSAQNYGNEIGEWVLCRLSVRKRSGLEYGSTSTPNSRLMFDFMMVNNKTCSSTSSSCSSSSNNIEVSSNVQDHEQDYADHF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3398 227 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 227 - -
Mtr8g3398 227 ProSiteProfiles NAC domain profile. 14 167 IPR003441 GO:0003677|GO:0006355
Mtr8g3398 227 SUPERFAMILY NAC domain 10 165 IPR036093 GO:0003677|GO:0006355
Mtr8g3398 227 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 227 - -
Mtr8g3398 227 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
Mtr8g3398 227 MobiDBLite consensus disorder prediction 199 227 - -
Mtr8g3398 227 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Mtr8g3398 227 MobiDBLite consensus disorder prediction 199 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3398 Mtr-Chr8 44493630 44495075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3398 1 171 NAC Transcription Factor Family AT5G13180 60.465 7.05e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr8g3398 NAM 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3398 - - gmx:100812015 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3398 8 44493630 44495075 Mtr3g3485 3 48728058 48729345 ECH
Mtr8g3398 8 44493630 44495075 Mtr8g3398 8 44493630 44495075 ECH