Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3396 ATGGGTTGCGCGCTCGGAAAACCTGCCGGTGCCGGAGCTCGGCATCGTCGCCGTGATAACACTGCAACTGCTAACGGAGGTAATAATGCTGTTGAAGTTCAGGAGAAGCAGGAGGCTGAGGCTCCTACCGCCTGTGAACTTCCGGCACCGGTGAGCCTGCTACCTCGACTTAATTCATTGGCAGCAACTCAACAGAGTTGGCCGCCGTGGTTGATGGAAGTTGCTGGTGATGCAATCCGAGACTGGACTCCTCGGCGCGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGAAAGGGACTTATAGCAATGTGTACAAAGCTAAAGACCTTGTTACTGGAAAGATAGTGGCATTGAAGAAAGTTAGAATTGATAATTTGGACGCTGAGAGTGTGAAGTTTATGGCAAGAGAGATTCTTGTTTTGAGGAAGCTTGATCACCCCAATGTTATAAAGCTTGAGGGTTTGGTTACTTCAAGAATATCATCAAGTCTTTACTTGGTATTTGAGTACATGGAACATGATCTTGCTGGTCTTATAGCTGGCCTTGGTGTCAAATTCTCTCTACCTCAGGTCAAATGTTATATGAAACAATTATTGTCTGGCCTTGAGCATTGCCATAGCCGAGGTGTATTGCACCGTGACATCAAGGGCTCCAATTTGCTTATTGACGACGAAGGAATACTTAAAATTGCAGATTTTGGACTCGCGACTTTCTACGATTCTAAGCAAAAGCATCCGATGACTAGTAGAGTCGTGACCCTTTGGTATCGTCCCCCCGAGCTTCTTCTTGGAGCTACATTCTATAGTGTTGGGGTTGATCTTTGGAGCGCTGGCTGCATTTTGGCAGAGCTTCTTGCCGGAAGACCAATCATGCCTGGAAGAACCGAGGTTGAGCAACTTCACAAAATATTTAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAGATTGCCAAACGCTACTCTTTTTAAGCCACAGCAACCTTATAAAAGGCGCATTTCAGAAGCATTTGCTGTTTTTCCACCTTCTTCATTACCTTTAATTGGAACTCTTCTTGCAATAGATCCTGATGACCGCGGAACTACCTCTTCTGCTCTGATTAGTGAGTTCTTTACCACTGAACCCTATGCTTGTGAACCATCAAGTTTACCAAAGTATCCTCCCAGTAAAGAATTGGATGTGAAGCTGAGAGACGAAGAAGCAAGAAGGCAAAGAGCTCTAAGTGGAAAATCTAATGCAGTTGATGGTGCCAGACAAAGTAGAGCACGTGAGCGCAGTTATGCCATTCCAGCCCCAGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGTTGAGAGTTGTGACAAATGGAAATGGAAAAAGTAAAAGTGAGAAATTTCCACCTCCTCATGAAGATGGAGCTGTAGGATATCCAGGGGATGGATCAAATAAAGGAGCTGTTTCATTTGGAACAACTGAAAAAACTTCATTTAGTTCAATATTATCTAATTCAATACATTCTAAATCTGTTGGAAGTTATGCAGGCAGCTCTTATAAAAGGAGGAAAAGTAATGAAGCAGATTCCAGGATATCATCATGGAAATTTATGCGTTCTTCTTTCAAGCCCTCAACTGTGGGTCTTTCATTTAATTTATTATTTAGAAGCAGAAGATAA 1665 0.4318 MGCALGKPAGAGARHRRRDNTATANGGNNAVEVQEKQEAEAPTACELPAPVSLLPRLNSLAATQQSWPPWLMEVAGDAIRDWTPRRANTFEKLAKIGKGTYSNVYKAKDLVTGKIVALKKVRIDNLDAESVKFMAREILVLRKLDHPNVIKLEGLVTSRISSSLYLVFEYMEHDLAGLIAGLGVKFSLPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDDEGILKIADFGLATFYDSKQKHPMTSRVVTLWYRPPELLLGATFYSVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATLFKPQQPYKRRISEAFAVFPPSSLPLIGTLLAIDPDDRGTTSSALISEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQRALSGKSNAVDGARQSRARERSYAIPAPEANAEIQTNLDRLRVVTNGNGKSKSEKFPPPHEDGAVGYPGDGSNKGAVSFGTTEKTSFSSILSNSIHSKSVGSYAGSSYKRRKSNEADSRISSWKFMRSSFKPSTVGLSFNLLFRSRR* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3396 554 Gene3D Phosphorylase Kinase; domain 1 84 177 - -
Mtr8g3396 554 MobiDBLite consensus disorder prediction 1 40 - -
Mtr8g3396 554 MobiDBLite consensus disorder prediction 405 436 - -
Mtr8g3396 554 ProSiteProfiles Protein kinase domain profile. 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3396 554 Gene3D Transferase(Phosphotransferase) domain 1 178 413 - -
Mtr8g3396 554 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 45 513 - -
Mtr8g3396 554 Pfam Protein kinase domain 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3396 554 MobiDBLite consensus disorder prediction 454 485 - -
Mtr8g3396 554 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Mtr8g3396 554 SMART serkin_6 90 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3396 554 CDD STKc_CDK9_like 90 374 - -
Mtr8g3396 554 PANTHER CELL DIVISION PROTEIN KINASE 45 513 - -
Mtr8g3396 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Mtr8g3396 554 SUPERFAMILY Protein kinase-like (PK-like) 83 379 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3396 Mtr-Chr8 44485842 44489564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3396 82 406 Core Cell Cycle Gene Families AT5G10270 50.733 1.60e-114 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mtr8g3396 Pkinase 6.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3396 K08819 - gmx:100789359 837.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3396 8 44485842 44489564 Mtr8g3396 8 44485842 44489564 ECH