Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3392 ATGGCAGCTTTTTCATACCAATACCAACAACCCTTTCTTGTTGACTCTACATACTTCACCAATATAAACACTTCTCTTCCTCCTTCTCATCTTTTTCATAATCATCAAGAACTCTCTCTCAGTAATCAAGAAACTAGTTGTGTTGATCAAAACTCTAAGAATAGCATAAGTAACAACCAGAGTCCTGAATCATCCATGGTAGTGGACAATCTTGAAAAGGGTGAACAAGTTACTCAGAAAGCTGTTACTTCTATGGAGAAGAAAAGAAGAATCAGAAATAAGACTTCTTTGACTAAGGATATCTCAAAAGAAGAGAAAAGCAAAAAACAAAAGAAGAGTAGTGGTGAAGGGATGAAAGGAGAGGAAAAGAAAAAAGAAGAGAAGAAGGATCAAAAGAAAAATGTTGAAGAAGTTCCAACTGGTTATATCCATGTCAGAGCAAGAAGGGGTCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAAAGAATGAAGATATTGCAGCAACTTGTGCCGGGCTGTGATAGGGTAACCGGAAAGGCCCTTGTGTTGGATGAAATAATCAATTATGTACAGTCCTTACAAAATCAAGTAGAGTTCTTGTCAATGAAACTTGCTTCAGTGAATCCAATCTTCTTTGACTTTGCAATGGACCTAGACACACTCTTGGTTAGACCAGATCATCAGAGGTTAAATAGCATAACATCACCATCAACACCAATACCACATGTATCATTATGCAGCTCCAACCATGCCACACCTTTTGCTGACACAATTACCACAAGCTTCCATCCTGCTAATAATGACTATGTTTTGGATTATCCAACTTCAATTTTTCTTCAAGGGCAGAGGTCAAATACCTTCTTTGAGCACACTGATGGACCATTTTGGGACGTAGAAGACCAACGACAAAAGCTTCTTAATCCATATGGATTCGGCAACAACACATGTTCCTTAAATTAA 984 0.3831 MAAFSYQYQQPFLVDSTYFTNINTSLPPSHLFHNHQELSLSNQETSCVDQNSKNSISNNQSPESSMVVDNLEKGEQVTQKAVTSMEKKRRIRNKTSLTKDISKEEKSKKQKKSSGEGMKGEEKKKEEKKDQKKNVEEVPTGYIHVRARRGQATDSHSLAERVRREKISERMKILQQLVPGCDRVTGKALVLDEIINYVQSLQNQVEFLSMKLASVNPIFFDFAMDLDTLLVRPDHQRLNSITSPSTPIPHVSLCSSNHATPFADTITTSFHPANNDYVLDYPTSIFLQGQRSNTFFEHTDGPFWDVEDQRQKLLNPYGFGNNTCSLN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3392 327 MobiDBLite consensus disorder prediction 42 159 - -
Mtr8g3392 327 Gene3D - 148 217 IPR036638 GO:0046983
Mtr8g3392 327 Pfam Helix-loop-helix DNA-binding domain 155 202 IPR011598 GO:0046983
Mtr8g3392 327 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 327 IPR024097 GO:0006355
Mtr8g3392 327 Coils Coil 118 138 - -
Mtr8g3392 327 SMART finulus 157 207 IPR011598 GO:0046983
Mtr8g3392 327 MobiDBLite consensus disorder prediction 82 159 - -
Mtr8g3392 327 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 327 - -
Mtr8g3392 327 CDD bHLH_AtBPE_like 141 226 - -
Mtr8g3392 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 216 IPR036638 GO:0046983
Mtr8g3392 327 MobiDBLite consensus disorder prediction 42 67 - -
Mtr8g3392 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 151 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3392 Mtr-Chr8 44441123 44444517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3392 17 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 47.577 2.04e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g3392 HLH 7.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3392 - - gmx:100796018 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3392 8 44441123 44444517 Mtr8g3392 8 44441123 44444517 ECH