Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3380 ATGCCTTTTCAAGTCATGGATCAGAGGGGTGTTTCTGACCCCTCCAATTTTTTCGATGATATTTCATTTCATTCTGAGAGGAACATTGGATTAAGGAAGCCGAAATACATGAATGCCCAACACCCTCAAGGAATGAATGGAATGGTAGCACCGCCTGGCAGTACTTTGAGTGCTTCATCACCCTTTGAAGCAAAATCTGGATTTCCGATGTCACAGACTAGTCTATCGGAGGAAAGTGTACAAAAGCTACCTTTTGGTGGAGAACAAGGCATTGCTGATGTATTGAAGGGTTCAAACAGATCATTTCATCACAATCCCCAATCATGGTCTGACGTGTTCAGGCAGTCAGAACCTACGTCGTATCGTATAATCGGGAACAAGGTTGTTGCAACCAATGCTCTCCCTCGCGAAACTAGTTTATTTTCGAGCTCACTGTCGGATATGTTTAGCCATAAATTAAATATATTGGGGAATGATGTTCTGTCCGATCAGCCGACGGCTGCCAGTTCTCTTCTTGAGGAAGAACCATATAAATCTCTTGAACAGATGGAGGCTGACTATATACATAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTTGCTGACGGGTTAGAATACAATTCTCATGCTAGGACTAATGATGACTCGGAGTATACTGATGTTTTTAGCAGCGGTGGAGGCATGGAGCTGGAAGGAGATGAACATTTAAGTTCACTAAGAAGAACAAGTGGTTTGGATGGAGATCATGGTTTCTTTGGAGGTTCTAAAGGAAAACTTCCTTTTGTTGAACAGCCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGCGTAGAAGACTTTGAACTAAAGACTCTGTTTGAGCAATATGGAGATATCCGTACAATGTATACTGCTTGCAAGCATCGTGGCTTTGTCATGATTTCTTATTTTGATCTAAGAGCAGCACAAAGAGCAATGCAAGCCCTTCAAAGCAAGCCATTGAGGTCTCGGAAACTCGATATACATTATTCGATTCCAAAGGTCAATGCTCCAGAGAAGGATATTGGTCATGGTACGCTGATGTTATCTGGTCTTGATTCATCTGTTTCAAACGATGAGTTCAAACGTATTTTTGGCTTCTATGGAGAAATTAAAGATATCTATGAATATCCAGAGATGAAGCATCTCAAATTTATAGAGTTTTATGACGTGCGAGCTGCTGAAGCTGCACTTCGGGCATTGAACAGGATTGAAATTGCTGGAAAGCAGATCAAACTTGAACCTGGCCATCCTAGTCTGATGCAGCAGTCTCATAAGGTGCAAGATGAACGTGATATTGGTCATAGCATTATTGACAACTTATCATTAAGACAAAAGCCAACACTATCGTCTGGAGTAATTGATTCTGCTGGCTCGGAAAATGGATATAATCAGAGATTTCAATCTGCTATGCGGCAACAACCTTTGAATGGATTTATTGATAATGCATTATTTCATGTCAATTCTGGCATTAACAACACTGCAAGAGGGGGATCTATTGGAAAATTTTCTGGTGTTTCCGAGTCAAACAACCTTGTTGATGCAATGAAATTTGCATCTAGTCCAACAACATTTCATCCTCATTCTTTACCAGAGTTTCATGGTAGTTTAGCTAATGGTAGTCCTTATACCTTTTCAAGCACCATTAGCAACAAGGCTGGTAATATAGGTGCTGGAGTGACAGAAGCCTCCAATGGAAGGCATATTCACGGAATAAGCTCAGTTGGGAACTTAGCAGAATTCAATGGAGGAGGATCATCAGGAAATGGGATCAACGCACATCATGGACTTAATCATATATGGAGTGGCTCCAATTTGCATCAGCAATCTTCACCAAGTAACATGCTTTGGCAGAAAACGCCATCGTTTGTTAATGGTTCTCCAGGCCTTCCTCAGATGTCAAGCTTTGCTAGAACACCGCCTCATATGCTGAGAACACAACATTTGGACCATCACGTTGGATCAGCACCTGTTGTTACAGCCTCTCCCTGGGAAAGGAAAAACTCATACTTGGGAGAGTCTCCTGAGACTTCTGCTTTTCACTTGGGTTCTCCTGGAAATGGAGGTTTCCATGGTTCTTGGCAAATGCGTCCAATGGAATTTTCTGCTCATAATAACATGTTTTCTCATGTTGGTGGGAATGGTACTGAACTCTCGTCTAGTGCTGGACAGAGCTCGCCTAATCCGTTGTCACATATTCTCTATGGTAGACAGTCAACGACTGCAATGTCAAAATTTGATCCTACCAATGAACGAATGAGAAACCTCTACAGCCGTAAAACTGAAGCGAACACCAATGGCAATGCGGATAAAAAACTATATGAACTTGACCTGGGCCGCATATTGCGTGGAGAAGACAGCCGAACAACGCTCATGATAAAAAACATTCCCAACAAGTATACTTCAAAGATGCTACTTGTTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTCTATTTACCAATAGATTTCAAGAACAAATGTAATGTTGGATATGCATTCATAAATATGATTGATCCTGCTCAAATTATTCCTTTCCACCAGGCTTTCCATGGTAAGAAATGGGAGAAGTTTAACAGTGAAAAAGTAGCATCACTTGCATATGCCCGAATTCAAGGAAGAGCTTCTCTTGTTTCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTTCAGACAGAAGGCCCAAATGCCGGTGATATGGAGCCTTTCCCCGTTGGAGCCAATGTTAGAGTGAGACCTGGAAAATCTCGTAATGCTGGCAACGAGGAGAATCGCATCCAAGCTACTCCTTCAACTTTAGCAAGCGGAGAAGAGACTGCAAATGGAAACTCCGATTGA 2895 0.4159 MPFQVMDQRGVSDPSNFFDDISFHSERNIGLRKPKYMNAQHPQGMNGMVAPPGSTLSASSPFEAKSGFPMSQTSLSEESVQKLPFGGEQGIADVLKGSNRSFHHNPQSWSDVFRQSEPTSYRIIGNKVVATNALPRETSLFSSSLSDMFSHKLNILGNDVLSDQPTAASSLLEEEPYKSLEQMEADYIHNLLPDEDDLFSGVADGLEYNSHARTNDDSEYTDVFSSGGGMELEGDEHLSSLRRTSGLDGDHGFFGGSKGKLPFVEQPSRTLFVRNINSSVEDFELKTLFEQYGDIRTMYTACKHRGFVMISYFDLRAAQRAMQALQSKPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGLDSSVSNDEFKRIFGFYGEIKDIYEYPEMKHLKFIEFYDVRAAEAALRALNRIEIAGKQIKLEPGHPSLMQQSHKVQDERDIGHSIIDNLSLRQKPTLSSGVIDSAGSENGYNQRFQSAMRQQPLNGFIDNALFHVNSGINNTARGGSIGKFSGVSESNNLVDAMKFASSPTTFHPHSLPEFHGSLANGSPYTFSSTISNKAGNIGAGVTEASNGRHIHGISSVGNLAEFNGGGSSGNGINAHHGLNHIWSGSNLHQQSSPSNMLWQKTPSFVNGSPGLPQMSSFARTPPHMLRTQHLDHHVGSAPVVTASPWERKNSYLGESPETSAFHLGSPGNGGFHGSWQMRPMEFSAHNNMFSHVGGNGTELSSSAGQSSPNPLSHILYGRQSTTAMSKFDPTNERMRNLYSRKTEANTNGNADKKLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVSHFQNSSLMNEDKRCRPILFQTEGPNAGDMEPFPVGANVRVRPGKSRNAGNEENRIQATPSTLASGEETANGNSD* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3380 964 CDD RRM1_MEI2_like 268 343 IPR034453 -
Mtr8g3380 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Mtr8g3380 964 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
Mtr8g3380 964 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 961 - -
Mtr8g3380 964 CDD RRM3_MEI2_like 800 885 IPR034454 -
Mtr8g3380 964 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 961 - -
Mtr8g3380 964 SMART rrm1_1 270 338 IPR000504 GO:0003723
Mtr8g3380 964 SMART rrm1_1 799 875 IPR000504 GO:0003723
Mtr8g3380 964 SMART rrm1_1 355 423 IPR000504 GO:0003723
Mtr8g3380 964 SUPERFAMILY RNA-binding domain, RBD 266 425 IPR035979 GO:0003676
Mtr8g3380 964 Gene3D - 352 446 IPR012677 -
Mtr8g3380 964 MobiDBLite consensus disorder prediction 912 964 - -
Mtr8g3380 964 Pfam RNA recognition motif 2 797 893 IPR007201 -
Mtr8g3380 964 Gene3D - 263 351 IPR012677 -
Mtr8g3380 964 SUPERFAMILY RNA-binding domain, RBD 799 883 IPR035979 GO:0003676
Mtr8g3380 964 MobiDBLite consensus disorder prediction 939 964 - -
Mtr8g3380 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 421 IPR000504 GO:0003723
Mtr8g3380 964 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3380 Mtr-Chr8 44287210 44294823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3380 267 420 Eukaryotic Initiation Factors Gene Family AT1G71770 25.767 1.12e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3380 - - gmx:106798747 1377.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3380 8 44287210 44294823 Mtr3g3466 3 48482107 48489947 ECH
Mtr8g3380 8 44287210 44294823 Mtr8g3380 8 44287210 44294823 ECH
Mtr8g3380 8 44287210 44294823 Mtr3g3466 3 48482107 48489947 PCT