Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3352 ATGGGTAGATCTCCTTGCTGTGAAAAACAACACACAAACAAAGGTGCTTGGTCTAAGGAAGAAGACGAACGTCTTATTAACTACATCAAACAACAAGGAGAAGGTTGCTGGCGTTCTCTTCCTAAAGCCGCAGGCTTGGCAAGATGTGGAAAAAGCTGCAGATTGAGATGGATCAATTATCTCAGACCTGATCTTAAGCGTGGAAATTTCACTCACGAAGAAGATGAACTTATCATCAGCCTCCATGCTATGGTTGGAAACAAATGGTCTCAGATTGCTCAAAAATTGCCCGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACTCACATCAAACGCAAACTCTATAGCCGTGGAATTGATCCTACAACACATCAGCCACTCAAAACCCTCTCCGGTACCGCTGCCGCTTCAACCGGCACTTCCTCAGCAACAACCACCTCTGCAGAAGCTGCTTCTCCTACAATGGTTGTAAATAATAATCCTCCGGTATTTCCTGTGGTAGCCTCAAACAACGAGAGCAGTACTAGCAGCAGCATGAGCCACCACAACAAGATTAAGAGTGAGTTTCAGTTATTCAGTAATTTCAGTGGCTCTCGGCTTAAAAAGTTTGTCGCAACTGATTCTGGCTATGGTGGTGTTGAAGAATCAGTTTCAAACAGTAGCAGTGGTGTAACCGTTGAGGATATAGCTTATCCTCGTCAAATCAACTTGGAACTTTCATTGGCTATACCCTCTCCCTCTCAACAGCAACAGCCACAAGCTTTGTGTCTTTGTCGTCAAATATCTTTAGGGTTATATGGTAGTAGCCACCAACCTTGTTGCTGCAATAATACCATACCTATCGTTGGTGTTTCAACTTCTACTGCTCCACTACCTGCTACCACCGTCGCCGGGAATGGTTTTTTCAAATTTTCTGGAACCGGGATTGTCAACAAGTTTTGA 948 0.4388 MGRSPCCEKQHTNKGAWSKEEDERLINYIKQQGEGCWRSLPKAAGLARCGKSCRLRWINYLRPDLKRGNFTHEEDELIISLHAMVGNKWSQIAQKLPGRTDNEIKNYWNTHIKRKLYSRGIDPTTHQPLKTLSGTAAASTGTSSATTTSAEAASPTMVVNNNPPVFPVVASNNESSTSSSMSHHNKIKSEFQLFSNFSGSRLKKFVATDSGYGGVEESVSNSSSGVTVEDIAYPRQINLELSLAIPSPSQQQQPQALCLCRQISLGLYGSSHQPCCCNNTIPIVGVSTSTAPLPATTVAGNGFFKFSGTGIVNKF* 316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3352 315 MobiDBLite consensus disorder prediction 123 158 - -
Mtr8g3352 315 CDD SANT 69 112 IPR001005 -
Mtr8g3352 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr8g3352 315 CDD SANT 16 61 IPR001005 -
Mtr8g3352 315 MobiDBLite consensus disorder prediction 124 158 - -
Mtr8g3352 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr8g3352 315 Gene3D - 14 66 - -
Mtr8g3352 315 SMART sant 13 63 IPR001005 -
Mtr8g3352 315 SMART sant 66 114 IPR001005 -
Mtr8g3352 315 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mtr8g3352 315 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 253 - -
Mtr8g3352 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr8g3352 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr8g3352 315 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mtr8g3352 315 PANTHER TRANSCRIPTION FACTOR MYB7 1 253 - -
Mtr8g3352 315 Gene3D - 68 134 - -
Mtr8g3352 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr8g3352 Mtr-Chr8 44046587 44048185 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3352 1 135 MYB Transcription Factor Family AT4G38620 80.741 2.32e-82 249
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g3352 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3352 K09422 - gmx:778033 278.87
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3352 8 44046587 44048185 Mtr8g3352 8 44046587 44048185 ECH
Mtr8g3352 8 44046587 44048185 Mtr3g3423 3 48118873 48120918 PCT