Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3348 ATGATGGATAAGTATGAGCTTGTTAAGGATTTGGGTGCTGGCAATTTTGGTGTGGCTAGGCTTTTGAGGAATAAGGAGACCAAGGAGCTTGTTGCTATGAAATACATTGAACGTGGCCAAAAGATTGATGAGAATGTGGCTAGAGAGATTATCAACCACAGGTCTCTTCGGCACCCAAATATAATTCGCTTCAAGGAGGTGGTTTTGACCCCTACTCATTTAGCAATAGTAATGGAGTATGCAGCTGGAGGGGAACTCTTTGAGAGGATCTGTAATGCTGGTCGGTTCAGCGAAGATGAGGCTAGATATTTCTTTCAGCAACTGATATCTGGTGTCCATTACTGTCATGCCATGCAAATATGTCACAGAGATTTGAAGCTGGAAAATACACTTTTAGATGGAAGCCCTGCACCTCGCTTGAAAATTTGTGACTTTGGTTATTCCAAGTCATCTTTGCTTCATTCCCGACCCAAATCAACTGTTGGAACTCCAGCTTATATAGCACCGGAGGTTCTTTCTAGGAGGGAGTATGATGGGAAGTTGGCTGATGTCTGGTCCTGCGGAGTGACCCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGATCAAGATGACCCTAGAAATTTTAGGAAAACAATTCAGCGCATAATGGCTGTTCAATACAAAATCCCTGATTATGTCCACATATCTCAAGATTGCAAACACCTCTTATCTCGTATATTTGTTGCAAATCCATTAAGGAGAATTTCTCTCAAGGAAATCAAGAACCATCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCCCAAGCTGCGTATTACCAGAGAGGCAACCCAAGCTTTTCTATTCAAAGTGTGGACGAGATAATGAAAATTGTGGGAGAGGCAAGAGAACCTCCTCCGGTATCTAGGCCGGTCAAAGGTTTTGGCTGGGAAGGCGAAGAAGAAGAGGAGGAAGAAGTGGAAGAAGAGGTTGAGGAAGAGGAGGATGAAGAAGATGAGTATGACAAGAGGGTCAAAGAGGTTCATGCAAGTGGAGAATTTCAAATCAGTTAA 1068 0.4298 MMDKYELVKDLGAGNFGVARLLRNKETKELVAMKYIERGQKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHAMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPRNFRKTIQRIMAVQYKIPDYVHISQDCKHLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAAYYQRGNPSFSIQSVDEIMKIVGEAREPPPVSRPVKGFGWEGEEEEEEEVEEEVEEEEDEEDEYDKRVKEVHASGEFQIS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3348 355 SUPERFAMILY Protein kinase-like (PK-like) 2 292 IPR011009 -
Mtr8g3348 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Mtr8g3348 355 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3348 355 MobiDBLite consensus disorder prediction 316 339 - -
Mtr8g3348 355 CDD STKc_SnRK2 4 260 - -
Mtr8g3348 355 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 3 348 - -
Mtr8g3348 355 Coils Coil 315 349 - -
Mtr8g3348 355 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3348 355 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Mtr8g3348 355 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Mtr8g3348 355 Gene3D Transferase(Phosphotransferase) domain 1 81 269 - -
Mtr8g3348 355 PANTHER SERINE/THREONINE KINASE 3 348 - -
Mtr8g3348 355 MobiDBLite consensus disorder prediction 303 355 - -
Mtr8g3348 355 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3348 Mtr-Chr8 44011464 44014604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3348 4 264 CBL-interacting serine-threonine protein kinases AT4G24400 43.333 3.40e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Mtr8g3348 Pkinase 3.6e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3348 K14498 - gmx:547968 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3348 8 44011464 44014604 Mtr8g3348 8 44011464 44014604 ECH
Mtr8g3348 8 44011464 44014604 Mtr3g3419 3 48075848 48079416 PCT