Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3343 ATGCCTCTTTTAAGGAGAAAGCCTTTGGCTTTGGCTGAGCCTCCCGAGGATTTGAAGCCAGATGAGCATGTTTACCAAGTTCGATTTACAAAAGAAATTTTTCGAGATTATCACGATTATTTGCAACGTTTGAATCTATACCGCCAGAGGGTTTGGTCATGTAAGGTCACTGGAAAAACTGGCTTGACTTATGAAGAGGCTATTGTGTCAGAACAACGAGCGACTGAGAAGTTCCTACAGTTTCCAAAAGAATTCATGACTCCTGCTTTAAAGATCATTCAGTACAGTATGCTCCCTTTGAAGGAGCTTGCCGATTCTCTTGCTGAAAAATTGCAGGAGCGTTTGTTTGTTGGTGCGGAATTGTATGGAAAAAAAAATGATGATGTATGTCCATGCAAAATATTAAAAGTCATCCATGAAGGAGCCGATAAATACTGTTATGAGGTAGCTTGGTACGACAAAAACAAGAATATAAGTGAAAAAACAGAAGTCCATGCAGAAGATTTGGTGCAGAAGAAGCCCCTTTTTAGTAGAAATACTCTAAAGTCTTTCATCCGGGAATCTACCTATCGAAATGCCCCTTGGGTTTTACATGACAAACTGGCACAAAATCATGGTATCTCCACCGATGTTCCTGAGGAATTAAGAGGAAAGGTTTTTCTCAAAGACGGACTTATAATTTGCTCCAAGAAAAGGAATAATGAGGAATCAATGGAAGAAGCCGATAAACATAAAAGAAAGAAGTTGGACAGGACACTAGTCAATGGTTCTGCACAAGAGAAAGAACATGAAGAACACAAGGAAATCCCAGTCAAATATCCCATTGATGATCTATTGGTGAAGCCTAGTCCAGATGACCCTGTTTTCACTGATCGTCCTTCTCCATCAAGAGACTTCAATGTTCCAATGCATTGTGTAGGGAATCTCTTAATGGTGTGGGATTTTTGTACTTCTTTTGGTAAACAGTTAAACTTGTCGCCGTACTCTTTGGAAGATTTTGAAAATGCAATCTGCCATAAGGATGGGAATGCGGTTCTCCTTGTCGAATCTCATGCTGCACTTTTTCGAGTTCTTATCAAAGATGATGGTGAATACACTTCAGCTGTACAGAAACGAAGTGTGAAGAAGATAACAATGGTTAACTGGAGAGAATATTTATGCGATTTTCTAGAAATGATCAATATTCCTCAATTACGGCACTGTGAAGGAACCATAAAACGGGGACATTATTGCCTTGTAGATGCCAGTGCTAAACTAGAAATCTTATGTGAGTTGGTCAATCGAGCCCTTGAAACTGCAATTTTCAGGGAAAACTTGGATGAGTTTATTGAACAGAGGCAGGAACTTGGGGCCTCTAAAAGAGAACAAGCACTAGAAGAAGGTAGAAAGAGAAGAGAACAAAAAGAGAGGTTGAAAGCTGACTCAGAAAGCAACGGGAATCATCTCAACGGTGCTGATATTCTTTCAAACAATAATCACATTAAACAAAATGGACATGTGGGGAAGAAAATAAATGGAGAGATAGAATCATCTAGGCAAGACAATTCACTGGGTAAAAGCGGGGTTAAGCGTTCAAGCCCTGCTTCAAAAAAGACTCCAAAAAACCTGGATACAGAGCTGAAAGAACCAGCAGAAAATGGAAAAGAATTATCCAGAAAGGATCCATCAGAGAAGAATAGTATAGAGCAGAGGAGAGAATACTTTGAACGAGAGATGGAGAAACGACCTATTAGTAGAAGCCCATTAGGTAAAGACCGAGACTACAATAGGTATTGGTGGTTCCGTCGCGATGGGAGGATATTTGTTGAAAGCTGCGACTCCAAGGAGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCATTGATCGGTTCGCTGAATTGCAAGGGTGAGCGGGAAAGGGCACTGCAAAAACAACTGGAAATAAATTATCGTAGTATATGCACAGAACTGCAGAAAAGATCAAAGGAATTGTTGCAGAATATTGCGAATGACGAGTCTGTGCTTCGAAGGTCTACTCGTGTTCGAGCTCCACCCAGGGAAAATCCTGCCAGTGCTTTCCTCAAATATGTTAACAAGTGGAAAGAAGATTAG 2094 0.4054 MPLLRRKPLALAEPPEDLKPDEHVYQVRFTKEIFRDYHDYLQRLNLYRQRVWSCKVTGKTGLTYEEAIVSEQRATEKFLQFPKEFMTPALKIIQYSMLPLKELADSLAEKLQERLFVGAELYGKKNDDVCPCKILKVIHEGADKYCYEVAWYDKNKNISEKTEVHAEDLVQKKPLFSRNTLKSFIRESTYRNAPWVLHDKLAQNHGISTDVPEELRGKVFLKDGLIICSKKRNNEESMEEADKHKRKKLDRTLVNGSAQEKEHEEHKEIPVKYPIDDLLVKPSPDDPVFTDRPSPSRDFNVPMHCVGNLLMVWDFCTSFGKQLNLSPYSLEDFENAICHKDGNAVLLVESHAALFRVLIKDDGEYTSAVQKRSVKKITMVNWREYLCDFLEMINIPQLRHCEGTIKRGHYCLVDASAKLEILCELVNRALETAIFRENLDEFIEQRQELGASKREQALEEGRKRREQKERLKADSESNGNHLNGADILSNNNHIKQNGHVGKKINGEIESSRQDNSLGKSGVKRSSPASKKTPKNLDTELKEPAENGKELSRKDPSEKNSIEQRREYFEREMEKRPISRSPLGKDRDYNRYWWFRRDGRIFVESCDSKEWGYYSSKEELDALIGSLNCKGERERALQKQLEINYRSICTELQKRSKELLQNIANDESVLRRSTRVRAPPRENPASAFLKYVNKWKED* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3343 697 MobiDBLite consensus disorder prediction 453 476 - -
Mtr8g3343 697 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 579 641 IPR028941 -
Mtr8g3343 697 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Mtr8g3343 697 MobiDBLite consensus disorder prediction 477 498 - -
Mtr8g3343 697 SMART testlast3 303 364 IPR018501 -
Mtr8g3343 697 MobiDBLite consensus disorder prediction 534 561 - -
Mtr8g3343 697 ProSiteProfiles DDT domain profile. 303 364 IPR018501 -
Mtr8g3343 697 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 695 - -
Mtr8g3343 697 Pfam DDT domain 304 361 IPR018501 -
Mtr8g3343 697 MobiDBLite consensus disorder prediction 453 561 - -
Mtr8g3343 697 Coils Coil 454 478 - -
Mtr8g3343 697 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 24 120 IPR013136 -
Mtr8g3343 697 MobiDBLite consensus disorder prediction 510 533 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3343 550 641 Homeobox Transcription Factor Family AT1G28420 33.663 8.51e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Mtr8g3343 WAC_Acf1_DNA_bd 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3343 - - gmx:100789956 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3343 8 43946797 43954737 Mtr8g3343 8 43946797 43954737 ECH