Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3314 ATGCAAGGAGCATTAGAGTTACCACCTGGCTTCAGATTTCACCCTACTGATGATGAGCTTGTGAATCACTACTTGTGTAGAAAGTGTGCTTCCCTTCCAATTGCTGTTCCTATTATCAAAGAAATTGATTTGTATAAGTTTGATCCATGGCATCTTCCAGAAATGGCTCTTTACGGTGAGAAAGAGTGGTATTTTTTCTCTCCAAGGGATCGAAAATATCCAAACGGTTCACGGCCGAACCGGGCTGCGGGAACCGGATATTGGAAGGCGACCGGAGCTGATAAGCCGATTGGAAAGCCTAAGGCACTTGGTATAAAGAAAGCACTCGTTTTCTATGCTGGCAAAGCTCCCAAAGGAATTAAAACCAATTGGATCATGCATGAGTATCGTCTTGCTAATGTTGATAGATCCGCTTCAAAAAATAACCACAATTTAAGACTCGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATACAATGACACAAAACCACCAATGTTTTCTCAATTTGAGAATGAGACAAAGCCTCATATCAAGATGAACATGAACGGCCAGGATGATCAATTGTACACTGACACATCAGATTCGGTGCCACTGTTTCATACCGACTCAAGCGGTTCTGACCACGTGGTTTCACCGGATGTCACGTGCGATAATAAGGAAGTTCAAAGTGAGCCCAAGTGGAATGAATTTGTTCTGGGCTCAGACCCAGTTTCAGCCTTTGATTTTCAGTTGAATCTTATGGATGATGCTGAAGATGACCCTTTTGCCCCTCAAATTCAATACCAAATCAATCAGCTTTCGGGTTGGCAAGATGTGTTTATGTACCTGCCCAAGTAA 858 0.4242 MQGALELPPGFRFHPTDDELVNHYLCRKCASLPIAVPIIKEIDLYKFDPWHLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKALGIKKALVFYAGKAPKGIKTNWIMHEYRLANVDRSASKNNHNLRLDDWVLCRIYNKKGKIEKYNDTKPPMFSQFENETKPHIKMNMNGQDDQLYTDTSDSVPLFHTDSSGSDHVVSPDVTCDNKEVQSEPKWNEFVLGSDPVSAFDFQLNLMDDAEDDPFAPQIQYQINQLSGWQDVFMYLPK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3314 285 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 262 - -
Mtr8g3314 285 Gene3D NAC domain 16 163 IPR036093 GO:0003677|GO:0006355
Mtr8g3314 285 ProSiteProfiles NAC domain profile. 7 158 IPR003441 GO:0003677|GO:0006355
Mtr8g3314 285 SUPERFAMILY NAC domain 3 158 IPR036093 GO:0003677|GO:0006355
Mtr8g3314 285 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Mtr8g3314 285 PANTHER NAC TRANSCRIPTION FACTOR 56 5 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3314 Mtr-Chr8 43624849 43626637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3314 1 285 NAC Transcription Factor Family AT1G01720 63.014 3.98e-121 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr8g3314 NAM 8.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3314 - - gmx:100170751 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3314 8 43624849 43626637 Mtr8g3314 8 43624849 43626637 ECH
Mtr8g3314 8 43624849 43626637 Mtr3g3394 3 47816200 47817832 ECH