Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3311 ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAAGCAGCTCTTAAAGCTGGAGTTGCCAAGCATGGGGTGGGAAAATGGCGTACAATAATCAAGGATCCTGAATTCAACCGTGTCTTGTTTATTCGCTCAAACGTCGATCTCAAGGATAAATGGAGAAATTTGAGTGTAATGGGAAATGGATCGAGCTCCAGGGAGAAGTCTAAGGGAGCAATCAAAAGGTTGAATCATCCGGTACCAAAACAGGATGACAACTCTATGGCTATCACTGCGGTTACTGGTCCATCCGATGATGATGAAATTGTTGATGCCCAACCTCTTCAAGTCTCAAGAGACATGCCGCACATTCCTGGTCCAAAAAGATTAGATAACCTTATATTGGAAGCTATATCTAGCTTGAATGAGCTCGGTGGTTCTAATACAACAACTATTGCTTCTTTCATAGAGGACCAATACCGGCCACCTGCAGACTTCAAAAAGTTGTTGTCAGCAAAACTGAAGTATCTTACATCTAGCGGAAAATTGATTAAGGTGAAGCGCAGGTATAGGATTGCACCTACCCCGTCATATTCAAACAGAGAAAGACAGCCACCCATGTTATTATTGGAAGGGAGGCAGAAAACCTCTATGAAATTGGACAGGGTCGAGAGAAAATACCCTACAAAGTCTGAGATAGATTTAGAAATAGAAAAGGTAAGGTCCATGTCTGCTCAAGAGGCTGCCGCATATGCTGCTCGAGCAGTCGCTGATGCAGAAGCCGCCATAGCGGAAGCTGAAGAGGCAGCTAAGGAGGCAGAGGCTGCAGAAGCGGATGCAGCTGCAGCAGAAGCTTTTGCAGAAGCTGCATTGAAAACACTGAAGGGGAGAAACACCTCAGAGACGAAGAGAGTGAATTTCTGTGTTACTCTAAATAGGTGCTCCTAA 927 0.4488 MGAPKQKWTSEEEAALKAGVAKHGVGKWRTIIKDPEFNRVLFIRSNVDLKDKWRNLSVMGNGSSSREKSKGAIKRLNHPVPKQDDNSMAITAVTGPSDDDEIVDAQPLQVSRDMPHIPGPKRLDNLILEAISSLNELGGSNTTTIASFIEDQYRPPADFKKLLSAKLKYLTSSGKLIKVKRRYRIAPTPSYSNRERQPPMLLLEGRQKTSMKLDRVERKYPTKSEIDLEIEKVRSMSAQEAAAYAARAVADAEAAIAEAEEAAKEAEAAEADAAAAEAFAEAALKTLKGRNTSETKRVNFCVTLNRCS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3311 308 Gene3D - 120 196 IPR036388 -
Mtr8g3311 308 MobiDBLite consensus disorder prediction 59 84 - -
Mtr8g3311 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3311 308 SUPERFAMILY "Winged helix" DNA-binding domain 122 197 IPR036390 -
Mtr8g3311 308 Gene3D - 8 85 - -
Mtr8g3311 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 31 IPR017930 -
Mtr8g3311 308 Coils Coil 242 279 - -
Mtr8g3311 308 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3311 308 PANTHER SINGLE MYB HISTONE 4 1 294 IPR044597 GO:0003691
Mtr8g3311 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mtr8g3311 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mtr8g3311 308 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Mtr8g3311 308 SMART h15plus2 119 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3311 308 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 294 - -
Mtr8g3311 308 CDD SANT_TRF 6 56 - -
Mtr8g3311 308 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3311 Mtr-Chr8 43585972 43597959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3311 1 291 Single Myb Histone (SMH) Gene Family AT1G49950 61.279 1.25e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr8g3311 Linker_histone 1.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3311 K09422 - gmx:778173 326.25