Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3302 ATGGCGGCGAATAAGAGCGTCAAAAAACCCCAAAGCCTCAACGATAGTCACTATCGCTTTCTTCAAGATCTCTCTGCTCCTCCTAAACCCTCTTCCAAATCCATTGACGATGAACTCGATACTCCGATTCAACCTCGAAACCTCGTCTATCAAGACGTTGATGATGATGATGATGATACTATTCCTCAGTTTTCTGCTATCACTGACTTCGATTCTCCAATCGGTCAAAATTCTCTGGAAAATCTTCAACCAGATAAAGTAGAAGAAGCTCCTCTTCCTAAGGTTCCGCTGTTTTTCGAAGATTCTTCTCTTCGTAAAGAAAAATCTCCTGATAATTGCCAACAGCTTTGTTCAGAAGAATCTCCTCTTCCTCATGAGGTTCAACATGATTTGGATAATTGTTCTCTTAGTCAAAATTCTAATGAGAATCACCAACCAGTTATGGTTCAAAAAGCTCCTCTTCCTAACGAGGTTCCAAAGGATTTTGAGAATTACTCTTCTAGTCAAAATTATTCGAAGATTCTCCAACCAGTTAAGGCAGAAGAAGCTCTTGTTCCAAAGGAGGTTCCACGGACTTTGGATGAGTGTTCTCTTAAAGAGGAAAAGAAGACTAAGGTTAAGGTGCAAGGGCGGCGTCGTCTTTGCAAGGCTGCGGATAAAGAGGCAAGCAAAAGTGTGGCAGATGACGAGCCTACGTTTGATGGTGATCTTGTGGATTTTGATTCGCCTATTCCGGTGTGGAAAAATGTGATTGAGATTGAGGAGAGTAGGGGTAGGAATGATATTAGGGATATTTTGAATGAGCTTAGCTCCAAGTTTGATGAGCTATCAGTTGAGAAGACAAAGCCGAAGACGGTGACAAAGCCGAAGACAGTGACAAAGCCGAAGACAGTGACAAAGCCTGTTGAGCGAGGGAAAGAAATTTTTGAAGATGAGGGTTTGGAGTTTGGGAGTGCTGGATCTTCATTTTCACCAAAACAAGATCCCCATGACATCTCATCAAAGGATACTAAGAATGATAGCGGTGGTCTTGAGTATGAATCAGATGATTCAGTTCAGGTGTTGGATCACTTTGAGCCTGAGAATGATGGTTCTATAACATTGAATGACCCACGATCTACGTATAAGTTGCAGCCTAAGATTGCAAAAATGTTGTATCCACATCAGCGGGAAGGATTGAAGTGGCTCTGGTCATTGCATGTTCGGGGTAAAGGTGGAATCTTGGGAGATGATATGGGTTTGGGAAAAACAATGCAGATTTGTGGCTTTCTTGCTGGACTGTTTCATTCCCGTTTAATTAGAAGGGTATTGGTTGTGGCCCCCAAAACACTATTGCCACATTGGATCAAAGAATTATCAGTTGTTGGCCTATCTGAGAAGACGAAAGAATATTTTGGAGCTTGTGCAAAACTCAGAGAGTATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACCACATATGATATTGTCCGCAACAATACCAAGTCCTTAAAGGGGCATAGATATTTTGATGATGAGGATAATGAAGATGGCCCTACATGGGACTACATGATACTTGATGAGGGGCATCTTATAAAGAACCCAAGCACTCAGAGAGCTAAAAGTTTGCTCGAGATACCCAGCGCTCATCGCATTATCATTAGCGGCACGCCACTGCAAAATAATCTCAAGGAATTGTGGGCACTGTTCAATTTCTGCTGCCCTGACTTGCTTGGTGACAAAAAATGGTTCAAAGATAAATATGAAACACCTATACTTAAAGGAAATGATAAAAATGCTTCGGCCAGAGAGAAATGTATTGGTTCGTCTGTAGCAAAGGAGCTAAGGGATCATATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGATACAGAAAAAACAACTGCAAAACTTTCTCAGAAACGAGAAATCATTGTGTGGCTTAGATTGACCAATGTTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTCTCTCAGCATTTGATGGTTCACCACTGGCTGCCCTTACGATTTTGAAGAAAATATGTGATCATCCGCTTCTGTTGACTAAGCGGGCTGCGGAGGATGTATTGGATGGGTTGGAATCAATGCTAAAGCCAGAGGAGGTTAATGTTGCGGAAAAATTAGCGATGCATATAGCAGATGTTGCAGAAACAGATAAGTTTGAAGACAAGCATGATGTATCATGCAAAATAGTTTTCATCATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAGGGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATTTAATTCAGGAATGCATAACATCTCAAGGTTATGACTTTTTACGAATTGATGGCACAACAAAATCATGTGACAGAATAAAAATTGTTGATGATTTTCAAGATGGTGTTGGAGCTCCAATATTTCTGCTGACATCTCAAGTTGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCTAGTACTGATAATCAAAGTGTTGACCGAGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATCCGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGTTTCTGAACAGAAAGAACAAACTCGGTACTTTTCCCAGAAGGATCTCAAGGAGCTTCTCAGCCTCCCAAAAGACGGATTTGACGTGTCTGTTACCCAACAACAATTGGATCAGACACATGATTCTCAACATATAGTGGATGCCTCTTTCCAGGCACATTTAGAGTTCCTGAAAAGTCAAGGCATAGCAGGAATTAGTCATCACAGTTTACTGTTTTCAAAGACAGAGCCAGTTCAGGAGGCTCCTGCATATGAAGTAGAAAATAACCACTGGAAACCTAATCCTAATGCTAGATATACTGGAACTTCATCATCATCTTCACATGAGCAAGTTGTTGATGGAGCTGCGTTTGCTTTTAATCCCAAGGATGTTAATGTACGCAAAAAAGAATCTTCTCCGAGCAGTGTTGGTAAATTGACCGAGTTAGAAATCAAGGATAGAATTGATCGGCTCTCCCTAATGCTCTCAAATACGGTGATGATTTCTAAATTACCCGACAATGGAGAGAAACTAAAGAAACGGATTGCTGAGCTGAATCGAGCACTTACTAAACTGAAGATGGAACAAACAAACATAGTTGATTTGGATGATATTGCTGGTGAATTTGAAAGGGTGTTGAACGTATAG 3288 0.406 MAANKSVKKPQSLNDSHYRFLQDLSAPPKPSSKSIDDELDTPIQPRNLVYQDVDDDDDDTIPQFSAITDFDSPIGQNSLENLQPDKVEEAPLPKVPLFFEDSSLRKEKSPDNCQQLCSEESPLPHEVQHDLDNCSLSQNSNENHQPVMVQKAPLPNEVPKDFENYSSSQNYSKILQPVKAEEALVPKEVPRTLDECSLKEEKKTKVKVQGRRRLCKAADKEASKSVADDEPTFDGDLVDFDSPIPVWKNVIEIEESRGRNDIRDILNELSSKFDELSVEKTKPKTVTKPKTVTKPKTVTKPVERGKEIFEDEGLEFGSAGSSFSPKQDPHDISSKDTKNDSGGLEYESDDSVQVLDHFEPENDGSITLNDPRSTYKLQPKIAKMLYPHQREGLKWLWSLHVRGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRVLVVAPKTLLPHWIKELSVVGLSEKTKEYFGACAKLREYELQYILQDKGVLLTTYDIVRNNTKSLKGHRYFDDEDNEDGPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPDLLGDKKWFKDKYETPILKGNDKNASAREKCIGSSVAKELRDHIQPYFLRRLKSEVFNQDTEKTTAKLSQKREIIVWLRLTNVQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLDGLESMLKPEEVNVAEKLAMHIADVAETDKFEDKHDVSCKIVFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQECITSQGYDFLRIDGTTKSCDRIKIVDDFQDGVGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTSGTVEEKIYRKQVYKGGLFKTVSEQKEQTRYFSQKDLKELLSLPKDGFDVSVTQQQLDQTHDSQHIVDASFQAHLEFLKSQGIAGISHHSLLFSKTEPVQEAPAYEVENNHWKPNPNARYTGTSSSSSHEQVVDGAAFAFNPKDVNVRKKESSPSSVGKLTELEIKDRIDRLSLMLSNTVMISKLPDNGEKLKKRIAELNRALTKLKMEQTNIVDLDDIAGEFERVLNV* 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3302 1095 MobiDBLite consensus disorder prediction 316 346 - -
Mtr8g3302 1095 SMART ultradead3 380 580 IPR014001 -
Mtr8g3302 1095 PANTHER SNF2/RAD54 FAMILY MEMBER 326 965 - -
Mtr8g3302 1095 MobiDBLite consensus disorder prediction 135 165 - -
Mtr8g3302 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 638 913 IPR027417 -
Mtr8g3302 1095 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 397 572 IPR014001 -
Mtr8g3302 1095 PANTHER OS04G0692700 PROTEIN 326 965 - -
Mtr8g3302 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 622 IPR027417 -
Mtr8g3302 1095 Coils Coil 1055 1075 - -
Mtr8g3302 1095 SMART helicmild6 771 854 IPR001650 -
Mtr8g3302 1095 CDD SF2_C_SNF 737 865 - -
Mtr8g3302 1095 Pfam Helicase conserved C-terminal domain 745 854 IPR001650 -
Mtr8g3302 1095 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 745 904 IPR001650 -
Mtr8g3302 1095 MobiDBLite consensus disorder prediction 329 346 - -
Mtr8g3302 1095 MobiDBLite consensus disorder prediction 1 19 - -
Mtr8g3302 1095 Gene3D - 359 621 IPR038718 -
Mtr8g3302 1095 Gene3D - 641 942 IPR027417 -
Mtr8g3302 1095 Pfam SNF2-related domain 402 692 IPR000330 GO:0005524|GO:0140658
Mtr8g3302 1095 MobiDBLite consensus disorder prediction 276 297 - -
Mtr8g3302 1095 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3302 Mtr-Chr8 43480408 43490272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3302 385 908 RAD5 or RAD16-like Gene Family AT1G02670 24.162 2.25e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr8g3302 SNF2_N 2.8e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3302 K20093 - gmx:100779283 1417.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3302 8 43480408 43490272 Mtr8g3302 8 43480408 43490272 ECH