Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr8g3296 | ATGGATGATGAGAGTCATAGTAATTTGCCAAATGGATTCAACACAGAAAACCCTGAAACTCATTGTTTAAAAACAATCAACAACAATAATCATAATCATCATCACAATAGCAATAAAGAACAAGATCGTTTTCTTCCTATAGCAAATGTTGGTAGAATAATGAAAAAAGTTATTCCTGCAAATGGAAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTGTCGGAGTTCATAAGTTTTGTCACCGGGGAAGCATCGGATAAATGTCAAAGAGAAAAAAGAAAGACAATCAACGGTGATGATATTATTTGGGCTATTACAACGTTAGGCTTTGAAGAATATGTGGAACCATTAAAATGTTACCTTCAAAAATATAGAGATATTGAAGGTGAGAAAGTTAATGTTCCAAAACAACAAAGATCTGAACAAAGGCTACATCAACATCAACATCAACATAACCAAGATGAATTAAATAATCAACATTTCAACAATAGTGTATATACATCTACAAATCTCATGTCTCAAACTCCTTATATGACTACTGATCAACCATTTCCACTTCCTTTCTCTCCAAATTCGATTCAAAAACAATTACGACAGCAAGATCAGATTGATTCCATAGGGCATTGGTATGAATGA | 645 | 0.3287 | MDDESHSNLPNGFNTENPETHCLKTINNNNHNHHHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVEPLKCYLQKYRDIEGEKVNVPKQQRSEQRLHQHQHQHNQDELNNQHFNNSVYTSTNLMSQTPYMTTDQPFPLPFSPNSIQKQLRQQDQIDSIGHWYE* | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr8g3296 | 214 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Mtr8g3296 | 214 | MobiDBLite | consensus disorder prediction | 137 | 157 | - | - | |
Mtr8g3296 | 214 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 75 | 91 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Mtr8g3296 | 214 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 207 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Mtr8g3296 | 214 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 | 1 | 207 | - | - | |
Mtr8g3296 | 214 | MobiDBLite | consensus disorder prediction | 7 | 32 | - | - | |
Mtr8g3296 | 214 | MobiDBLite | consensus disorder prediction | 137 | 160 | - | - | |
Mtr8g3296 | 214 | SUPERFAMILY | Histone-fold | 41 | 158 | IPR009072 | GO:0046982 | |
Mtr8g3296 | 214 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 44 | 108 | IPR003958 | - | |
Mtr8g3296 | 214 | Gene3D | Histone, subunit A | 31 | 169 | IPR009072 | GO:0046982 | |
Mtr8g3296 | 214 | PRINTS | CCAAT-binding transcription factor subunit A signature | 72 | 90 | - | - | |
Mtr8g3296 | 214 | PRINTS | CCAAT-binding transcription factor subunit A signature | 91 | 109 | - | - | |
Mtr8g3296 | 214 | PRINTS | CCAAT-binding transcription factor subunit A signature | 110 | 128 | - | - | |
Mtr8g3296 | 214 | MobiDBLite | consensus disorder prediction | 179 | 200 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr8g3296 | Mtr-Chr8 | 43435135 | 43435779 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr8g3296 | 39 | 212 | CCAAT-HAP3 Transcription Factor Family | AT2G13570 | 67.391 | 9.66e-74 | 220 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Mtr8g3296 | CBFD_NFYB_HMF | 3.1e-27 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr8g3296 | K08065 | - | gmx:100778216 | 314.309 |