Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3296 ATGGATGATGAGAGTCATAGTAATTTGCCAAATGGATTCAACACAGAAAACCCTGAAACTCATTGTTTAAAAACAATCAACAACAATAATCATAATCATCATCACAATAGCAATAAAGAACAAGATCGTTTTCTTCCTATAGCAAATGTTGGTAGAATAATGAAAAAAGTTATTCCTGCAAATGGAAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTGTCGGAGTTCATAAGTTTTGTCACCGGGGAAGCATCGGATAAATGTCAAAGAGAAAAAAGAAAGACAATCAACGGTGATGATATTATTTGGGCTATTACAACGTTAGGCTTTGAAGAATATGTGGAACCATTAAAATGTTACCTTCAAAAATATAGAGATATTGAAGGTGAGAAAGTTAATGTTCCAAAACAACAAAGATCTGAACAAAGGCTACATCAACATCAACATCAACATAACCAAGATGAATTAAATAATCAACATTTCAACAATAGTGTATATACATCTACAAATCTCATGTCTCAAACTCCTTATATGACTACTGATCAACCATTTCCACTTCCTTTCTCTCCAAATTCGATTCAAAAACAATTACGACAGCAAGATCAGATTGATTCCATAGGGCATTGGTATGAATGA 645 0.3287 MDDESHSNLPNGFNTENPETHCLKTINNNNHNHHHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEEYVEPLKCYLQKYRDIEGEKVNVPKQQRSEQRLHQHQHQHNQDELNNQHFNNSVYTSTNLMSQTPYMTTDQPFPLPFSPNSIQKQLRQQDQIDSIGHWYE* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3296 214 MobiDBLite consensus disorder prediction 1 40 - -
Mtr8g3296 214 MobiDBLite consensus disorder prediction 137 157 - -
Mtr8g3296 214 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr8g3296 214 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 207 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr8g3296 214 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 1 207 - -
Mtr8g3296 214 MobiDBLite consensus disorder prediction 7 32 - -
Mtr8g3296 214 MobiDBLite consensus disorder prediction 137 160 - -
Mtr8g3296 214 SUPERFAMILY Histone-fold 41 158 IPR009072 GO:0046982
Mtr8g3296 214 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
Mtr8g3296 214 Gene3D Histone, subunit A 31 169 IPR009072 GO:0046982
Mtr8g3296 214 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Mtr8g3296 214 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Mtr8g3296 214 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Mtr8g3296 214 MobiDBLite consensus disorder prediction 179 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3296 Mtr-Chr8 43435135 43435779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3296 39 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 67.391 9.66e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr8g3296 CBFD_NFYB_HMF 3.1e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3296 K08065 - gmx:100778216 314.309