Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3290 ATGAAGATGCAGGGCTGTGAGGTTGAAGTCATTGGCATAAACTACAAAATCCACACAAACAAAGCAGAACACCCTTTTAAAATCTTCAGCAAATCTCCACAACTAGTAAATACTAATGTTCAAGAAACAGAAGAAGTTGAAAAAGGTTGCAGTGGAGTTAGGCATGTACTCAAGAATGTGAGTTTCCAAGCCAGACCATGGGAAATTCTAGCAATTGTTGGACCAAGTGGAGCTGGAAAATCATCACTTCTTGAGATCCTAGCAGGTAAACACAGACCACAAAAAGGGTCTGTGTTGTTGAACCAGAAGCCAGTAGACAAATCTCAGTTCAGAAAGCTATCAGGATATGTTACTCAAAAGGACACTTTGTTTCCCTTACTTACAGTTGAAGAAACCATGATGTTCAGTGCAAAACTAAGGCTAAAGCTTCCTCAACAACAACAATGTTCAAGGGTCAAGTCACTGATTAAAGAGCTTGGACTTGATCATGTTGCTGGTACTAGAATTGGTGATGATCGAGTCCGAGGTATATCAGGCGGTGAAAGGCGAAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTTTTGATTCTTGATGAACCAACTTCAGGGCTTGATAGTACTTCAGCTTTGCAAATTATTGACATGCTTAAGGTTATGGCTGAAACTAGAGGAAGAACTATAATACTAAGTATTCATCAACCAGGTTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTAGCTAATGGTTCTGTGTTACATCATGGAACTGCTGATTTACTGAGTGTGAATTTGAGATTGATGGGTCTAGAGCTTCCTCTTCATGTTAATGTAGTTGAATTTGCTATTGATTCCATTGATGTCATTCAACAACAACAACAATGGCAGGTGGAAACCGAAACACCAAGGCGATTGCAAGGGACAACGCAACAAAAGAAAGGCAGAGATGATGAACAACAAGGTGACGATAAAAGTGGTAAGTTCACTTTGCAACAGCTCTTTCAACAATCTAAAGTAATTGATGAAGATATCATCAATAAGACTGGAACTGGGATGGATTTCTCATATGATTTTGCTAATTCCAGATTGAGAGAAACTATGATTCTAACTCATAGATTCTCCAAAAACATATTTCGTACAAAAGAGCTATTTGCATGCAGGACAATTCAGATGCTGATTTCAGGACTAGTTTTAGGATCCATCTTTTGTAACCTCAAAGATGATCTAAGAGGAACACAAGAAAGGGTTGGTCTATTTGCTTTCATATTAACTTTTCTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTCTACAAGAAAGGGAAATTCTCATGAAGGAAACATCTTGTGGAAGCTACCGCGTATCATCTTATGCTATTGCAAATGGCTTAGTTTACTTGCCATTTCTTCTAATCCTAGCCATTTTGTTCACAGTTCCTTTATACTGGCTTGTTGGTCTCAACACAAACTTCACTGCTTTTTTGCACTTTCTGTTACTGATATGGCTTGTTCTTTATACAGCCAATTCAGTTGTGGTTTGTTTCAGTGCTCTTGTGCCTAATTTCATTGTTGGAAATTCAGTGATTAATGGCGTTATAGGCTCTTTCTTCTTGTTCTCTGGTTACTTCATCTCAAACCATGAGATTCCTAGTTACTGGATTTTCATGCATTATATATCACTTTTTAAGTATCCCTTTGAAGGGTTTCTGATCAATGAGTTCTCCAACTCAAAGAAGTGTTTGGAATATATGTTTGGTGCATGTGTGATGAAGGGAGAGGATGTGCTTAAAGAAGAAGGGTATGGAGGAGAAGGTAGTAGATGGAAGAATGTTGGTGTCACTGTTTGCTTCATCATGGTTTACAGATTCATTTCTTATGTTATTCTTAGATACAAATGTTCAGAGAGGAGTTAA 1926 0.3775 MKMQGCEVEVIGINYKIHTNKAEHPFKIFSKSPQLVNTNVQETEEVEKGCSGVRHVLKNVSFQARPWEILAIVGPSGAGKSSLLEILAGKHRPQKGSVLLNQKPVDKSQFRKLSGYVTQKDTLFPLLTVEETMMFSAKLRLKLPQQQQCSRVKSLIKELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTADLLSVNLRLMGLELPLHVNVVEFAIDSIDVIQQQQQWQVETETPRRLQGTTQQKKGRDDEQQGDDKSGKFTLQQLFQQSKVIDEDIINKTGTGMDFSYDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDDLRGTQERVGLFAFILTFLLSSSIEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTVPLYWLVGLNTNFTAFLHFLLLIWLVLYTANSVVVCFSALVPNFIVGNSVINGVIGSFFLFSGYFISNHEIPSYWIFMHYISLFKYPFEGFLINEFSNSKKCLEYMFGACVMKGEDVLKEEGYGGEGSRWKNVGVTVCFIMVYRFISYVILRYKCSERS* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3290 641 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
Mtr8g3290 641 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 1 634 - -
Mtr8g3290 641 SMART AAA_5 66 255 IPR003593 -
Mtr8g3290 641 Gene3D - 42 323 IPR027417 -
Mtr8g3290 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 265 IPR027417 -
Mtr8g3290 641 MobiDBLite consensus disorder prediction 313 328 - -
Mtr8g3290 641 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 634 - -
Mtr8g3290 641 MobiDBLite consensus disorder prediction 303 328 - -
Mtr8g3290 641 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 278 IPR003439 GO:0005524
Mtr8g3290 641 Pfam ABC transporter 57 205 IPR003439 GO:0005524
Mtr8g3290 641 CDD ABCG_EPDR 51 260 - -
Mtr8g3290 641 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3290 Mtr-Chr8 43393784 43396294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3290 55 283 Calmodulin-binding Proteins AT2G36910 22.449 1.95e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3290 K05681 - gmx:100789722 1052.35