Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3288 ATGATGGGGAGTGAAAGCAGTGTGAAGCTTCCACCTGGGTTTTACTTTTCTCCAACAGACGAAGAACTAGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATATCATCCTAACATCATACCTGAACTTCACTTGTCTCACCATGATCCTTGGGAAATATACGGTAAAGCATTGTCAAGTGAAAATGAGCACTACTTTTTCACGGAAGTGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAAATTGGGAATGAAGAAGTACCTTGTATTCAACCTTGGGGAAGGAATTGAAACAAGTTGGGTAATGGAAGAATATCATATTTCCTCATCTCCGGATGAGAATTGGAGCAAATGGGTTTTATGCAAAGTTTATGAAAAGGAAAAGAAGATGTCACAAGAAGGTGCAAGCTGTTGTTATAGCGATGAGGATATTGATGATAATGGAACAGATGTGTCATGGCTAGATGAAGTTTTTATGTCCTTAGATGATGATGATCTTGATCAAACAAGCCTACCTAATTAG 558 0.3781 MMGSESSVKLPPGFYFSPTDEELVLHFLYSKASLPYHPNIIPELHLSHHDPWEIYGKALSSENEHYFFTEVKENRSTENGYWKEIGVTKPINKLGMKKYLVFNLGEGIETSWVMEEYHISSSPDENWSKWVLCKVYEKEKKMSQEGASCCYSDEDIDDNGTDVSWLDEVFMSLDDDDLDQTSLPN* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3288 185 Gene3D NAC domain 19 143 IPR036093 GO:0003677|GO:0006355
Mtr8g3288 185 SUPERFAMILY NAC domain 6 138 IPR036093 GO:0003677|GO:0006355
Mtr8g3288 185 Pfam No apical meristem (NAM) protein 11 119 IPR003441 GO:0003677|GO:0006355
Mtr8g3288 185 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 180 - -
Mtr8g3288 185 PANTHER NAC TRANSCRIPTION FACTOR 56 4 180 - -
Mtr8g3288 185 ProSiteProfiles NAC domain profile. 10 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3288 Mtr-Chr8 43372046 43373613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3288 1 139 NAC Transcription Factor Family AT1G77450 41.358 1.58e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr8g3288 NAM 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3288 - - mtr:MTR_8g093790 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3288 8 43372046 43373613 Mtr8g3288 8 43372046 43373613 ECH