Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3278 ATGGCTATACCTAAATTGGTACCTGGATTTCGATTCTCTCCAACGGGAGTTGAATTGATTAAATACTTTCTTAAGAGGAAAGTGTTGGGAAAAAAGTTTCATAATGATGTCATTGCTGAACTTGACATATACAAATATGCTCCTTGGGATCTCCCAGAATTATCTTATCTCCAAAACGGGGATTTGGAGTGGTACTTTTTCTGTCCGATTGAGAAGAAGTATCGAAGTGGGCCAAGGATGAAACGAGCTACGGAAATTGGGTTTTGGAAAGCTACTGGTCAGGATAGAGCTGTTCAACAAAATAATCAAACTGTGGGGATGATTAAAACCCTAATATTTCACACTGGAAAATCACCACGTGGTGATCGAACTGATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACTTGGCTGACAAAGGAACTGTTCAGGATTCCTACGTAATCTGTAAGGTATTTCAAAAAGAAGGTCCTGGTCCTAGGAATGGGGCGCAATATGGGAGACCATTTAATGAGGAAGACTGGAGTGATGATGAAGTAGGAATACCTTTTGCTGAATCGGCTGCACTAGTTCCCAGTTTGCCTGTGACATCTAATAGTTCTGTTCTAAATGATCAGAATCTCCAAACTAGTGGATATATTGGTTCAATATCCATGCCGTGTCAATCAGAATTGGTGCCTTCTCCGGACCCAACAAATTCATGTCAAACAGGATTGACACCTTCTCCTGACCCTGCAAATCCATGTCAAACAGGATTTATGCCTTATCCAGACCCTGTGAATTCTTGTCAAACAGGAGGATTTATGCCGTCTCCCAACCCAGCAAATTCATGTCAAACAGGATTGACGCCTTCTCCTGACCCTTCAAATTCTTGTCAAACAGGATTTATGCCTTATCCAGACCCTGTGAATTCTTATCAAACAGGATTTATGCCTGCTTCCGACCCTGCAAATTCATGTCAAACAGAATTTATGCCGTCCCCTGACCATGCGAGTTCATGTCAAATAGGATTGATGCCTTTGCCTGACCCTGCAAATGATTCATATCCAGACAATCAAGCTGTTAATAATGATGACGACGATATTCTAGCAATGCTTGATATTTTCAAAGGCAATGGCGTATTGCCTGCACCCGACCCTGCAAATGATTCATATCCAGACAATCAAGCTGTTAATAATGATGATGATATTCTAGCAATGCTTGATATTTTTGAAGAGAACGGCATATTGCCTGAGGAAAACATTGCTGATGGTGCACTTTTAACTGACTTTTTTGATGGCTTGGAAGACGTGGATTGCTCGGCTGAATTGGGATCTGATGGCCAGAATGCGGACTTTAGCACATACGGACTGGCTTCTACGGGCAATGTTGTGGGGCATGACGACTTCGATTTCATGGAGTTGATTGATCTAGACTCTGATACGTTCTGGCAGACCCAACCTGAAAGTTGGAGTCGAAATAAATAA 1470 0.419 MAIPKLVPGFRFSPTGVELIKYFLKRKVLGKKFHNDVIAELDIYKYAPWDLPELSYLQNGDLEWYFFCPIEKKYRSGPRMKRATEIGFWKATGQDRAVQQNNQTVGMIKTLIFHTGKSPRGDRTDWVMHEYRLEDKDLADKGTVQDSYVICKVFQKEGPGPRNGAQYGRPFNEEDWSDDEVGIPFAESAALVPSLPVTSNSSVLNDQNLQTSGYIGSISMPCQSELVPSPDPTNSCQTGLTPSPDPANPCQTGFMPYPDPVNSCQTGGFMPSPNPANSCQTGLTPSPDPSNSCQTGFMPYPDPVNSYQTGFMPASDPANSCQTEFMPSPDHASSCQIGLMPLPDPANDSYPDNQAVNNDDDDILAMLDIFKGNGVLPAPDPANDSYPDNQAVNNDDDILAMLDIFEENGILPEENIADGALLTDFFDGLEDVDCSAELGSDGQNADFSTYGLASTGNVVGHDDFDFMELIDLDSDTFWQTQPESWSRNK* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3278 489 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Mtr8g3278 489 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Mtr8g3278 489 PANTHER PLANT NAC DOMAIN PROTEIN 385 475 - -
Mtr8g3278 489 PANTHER PLANT NAC DOMAIN PROTEIN 301 377 - -
Mtr8g3278 489 PANTHER PLANT NAC DOMAIN PROTEIN 1 244 - -
Mtr8g3278 489 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Mtr8g3278 489 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 244 - -
Mtr8g3278 489 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 385 475 - -
Mtr8g3278 489 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 301 377 - -
Mtr8g3278 489 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3278 Mtr-Chr8 43264281 43267422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3278 1 244 NAC Transcription Factor Family AT5G09330 51.953 1.37e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr8g3278 NAM 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3278 - - mtr:MTR_8g093580 1033.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3278 8 43264281 43267422 Mtr8g3278 8 43264281 43267422 ECH
Mtr8g3278 8 43264281 43267422 Mtr3g3344 3 47396421 47401473 PCT