Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3272 ATGGAAAATAACCAAAATAATACTAGTAGCGCATTCACAAGCACTTGGAATCTTGAAAAAATGGAAACAAATGAACAAAACCGTATTATTCTCCAACAAGATCATCATCAAGTTCCTATGAATTCTTCTGTAATTTGGCCACAAAATAACTACAGCAACATGATCATGGCACCACCACCACCACCATCTTCATCAGGTTCACTCAGTGACATCTTAGGGATCCATCGAATCGAAGACGTAGAAGAACAAGAAGAAGAGTTAGGAGCTATGAAGGAAATGATGTACAAGATTGCAGCTATGCAACCGGTGGACATCGACCCAGCAACGATTCGAAAACCAAAACGAAGAAACGTTCGAATCAGCGAAGATCCACAAAGTGTTGCAGCTAGACATAGAAGAGAAAGAATCAGTGAGAAGATTCGTATCCTTCAAAGACTTGTTCCTGGTGGAACTAAAATGGATACAGCTTCTATGCTTGATGAAGCCATTCGTTATGTTAAGTTTTTGAAGAGACAAATCAAGTTGCTTCAATCCACTCCTCAAAATCAACAACAACAACACATTCAATTGCCACTTTCATCACAATGCATTAATTCTACAACTCCTAGTGCTTTGTTATTGTCCCCTTCTTCCGGTTGTGACGTTTGGCCTTTTGCACCAAATTTACTACTCACTTCCACAACAGCTGCCACAGTGGACTTACCCGCCGGAGTTCAATTTGACGCCGGAGGACATTCACATGTTCATGCTTGTGATGGCTCATCAAGCTTTAACCATCATGAGGTAATTAGTGAGTGA 798 0.406 MENNQNNTSSAFTSTWNLEKMETNEQNRIILQQDHHQVPMNSSVIWPQNNYSNMIMAPPPPPSSSGSLSDILGIHRIEDVEEQEEELGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISEDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIKLLQSTPQNQQQQHIQLPLSSQCINSTTPSALLLSPSSGCDVWPFAPNLLLTSTTAATVDLPAGVQFDAGGHSHVHACDGSSSFNHHEVISE* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3272 265 CDD bHLH_AtIND_like 121 178 - -
Mtr8g3272 265 SMART finulus 126 175 IPR011598 GO:0046983
Mtr8g3272 265 Gene3D - 123 190 IPR036638 GO:0046983
Mtr8g3272 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 190 IPR036638 GO:0046983
Mtr8g3272 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Mtr8g3272 265 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 251 - -
Mtr8g3272 265 Pfam Helix-loop-helix DNA-binding domain 130 169 IPR011598 GO:0046983
Mtr8g3272 265 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 251 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3272 Mtr-Chr8 43203851 43204917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3272 89 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 80.899 1.18e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g3272 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3272 - - aprc:113856609 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3272 8 43203851 43204917 Mtr8g3272 8 43203851 43204917 ECH