Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3271 ATGAGCGGAGGTAGCAGAAAGCTATCTTCAAACCGGGATTCAAGAGATGAACCTGAATTTCCACCCGAGAGTGTTACTAAAAGCAATAGTTCAAGGTATTTGGAAAGAAATGATACGCTAAAACCAAGAATGAGGTTTTCACGCAAGGAGCCTTTTTCGGGAGTCAGAGGTTCAAATAAGGATGACGAAGACTACCAAGTTTTGGATGCAACATTTGCAAAAGACACTGATGGAAGCTACAATATGAAAATGTCTCCAGGGTTTGAGGAATGGAAAAATAGGGAACATAGTCAATATGCAAAAAATGATTATGGCAGGTCTAGGAGAAGTAGGAGCCGGAGTCCTCCACATGGTTTTAGTCATTCATCTGTTGATGATAGGAACAGAACGAGGGATGGCAGATCCGCACAACCTTGTAGAGATTTTGCTGTTGGGAACTGCAGAAGAGGCAGCCATTGTCATTTCCTTCACCATGATAAGCAAAGTTATGAGGATAGCAGGGAAAGTAGACACAGGCCAGATGGACGCAGATATTCTAATCCCCGTGAGAATGGGGATTATTCTCTTACAAATCGAAGATCTAATGAAGCTTGCATTTATTTTGCAAAGGGAAGGTGTAGAATGGGAGAATCATGCAAGTATGTGCATCATGACAATTCCGACGGGTTTGATAAAATTTTGGCAGATGAATCATCTAGTGAAAGGGAAATTGATAGAAGACACATAGAGCAATCATTCAAGCAGGGTGACCAGCATTATCCAAACCACAGCAGTAACACTCCTTGCAAATTTTTTGCTCTTGGGAATTGTCGGAATGGTAAAGATTGTAGGTTTTCTCATGATAGGCAAGCATTTACCAGCCCTGGATTAAGGGATGATAGGTCAAGGAGTAATCAAGGTGAAGATCAGGTGTTGAATAGACCAAAATTGAGCAATTCAGTTGCTCCTAATGGAAGGCTAAGAGATGATAGATGTGGTTCAGATGGCAGAATGGCTGATGTAGATAAAGTTTGGGATGGTCCAATGCAGACTGATTTAGTTGCTGTCTCCGGCACGGTAAATTTGGTTGAGGACAACAAAAATGGAATCATAGGCGCCCCAGAACCTGGATTAATGGCTTGGCCAATGAATGATGGATCGGGCCATAGCTTAGACAGGAACAGAATGCATGATGAATCACCATTTTCAATTGATAAGAAGGAAGCCAACTGTAGGACGGCAGAAAATGCATTTGACAACATTCTAAATTCCCAGTCAGTAGGTGGAGGCATGTGGCCTGGTGATGAACAGATGTCTCCTGATTGGAATTATGGTCCGAGATCTTCCAATCATATTAAAGATGAGCATATGCAGAATAAGCAGCAAGTTGCTCCAGGACAAGGACTAAATCAGAATGCTCAGAATATAACTGCCTCCCATTTGGTTGGACAGAGTCAAGCAACAGTTGCCATTGTTCCTCCAAGAGCAAGAATTATTGAAGGTATACAGAACCAGAAACTTTCCACTGAGAAAAACTACATTGTTGAATCAAATATCATGAATGCAAGCCAATCACAAATCAGTTCTGGATATACTCCAACTCAGAACGGAGTCAGCAAAGAACAGCTTGCTCAACTTAGCTGCCTCTCAGCCTCTCTTGCACATATCCTCGGAACTGGTCAGCAGCTCCCACAAGTTCATTCTACTCTAAAGCCTTGTGATGCAAAGGCCACTCTCTTCGGAAGCAAAATTGAAGGGTCTGCTAATCCTGTTTCTATGACATTCATCAAGCCAGATCCTGCTATTGGATTGAAACAGTATGATCCATTGTTTGACAGTATGGAGCCCATGAATATTAGTGCAAATGGGGCCCCTCCAACCTTTTCTCCTAGTATAAAGATTCCGAAAAATGCAGTGGAAATTCCACCACTATTATCTAACATAGGACAGAATTGCGATGATTCTCTTAAAAAGGAGACTAACAAAATGGTAGCTGAAGAAAAGCCAATCTCTCAATCTGAAAATAACATTACAGAAGAGAATAGTCCTATGGGAGACATGGACCAAAATGATGGACCTGATGAGGCCAAGAAAACAAAGGACGCGAAGGGGAGTCGTGCATTTAAATCTTCATTGGTAGAGCTTATCAAGGAGATTCTGAAACCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAAGTTACTGATAAAGTAACTGGTACAGTTCAGCGGGTACATATTCCTCAGACACGAGAGAAAATTGAACGCTATTTATCAGTTTCGAAACCAAAGGTTAACAAACTTATACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2340 0.4132 MSGGSRKLSSNRDSRDEPEFPPESVTKSNSSRYLERNDTLKPRMRFSRKEPFSGVRGSNKDDEDYQVLDATFAKDTDGSYNMKMSPGFEEWKNREHSQYAKNDYGRSRRSRSRSPPHGFSHSSVDDRNRTRDGRSAQPCRDFAVGNCRRGSHCHFLHHDKQSYEDSRESRHRPDGRRYSNPRENGDYSLTNRRSNEACIYFAKGRCRMGESCKYVHHDNSDGFDKILADESSSEREIDRRHIEQSFKQGDQHYPNHSSNTPCKFFALGNCRNGKDCRFSHDRQAFTSPGLRDDRSRSNQGEDQVLNRPKLSNSVAPNGRLRDDRCGSDGRMADVDKVWDGPMQTDLVAVSGTVNLVEDNKNGIIGAPEPGLMAWPMNDGSGHSLDRNRMHDESPFSIDKKEANCRTAENAFDNILNSQSVGGGMWPGDEQMSPDWNYGPRSSNHIKDEHMQNKQQVAPGQGLNQNAQNITASHLVGQSQATVAIVPPRARIIEGIQNQKLSTEKNYIVESNIMNASQSQISSGYTPTQNGVSKEQLAQLSCLSASLAHILGTGQQLPQVHSTLKPCDAKATLFGSKIEGSANPVSMTFIKPDPAIGLKQYDPLFDSMEPMNISANGAPPTFSPSIKIPKNAVEIPPLLSNIGQNCDDSLKKETNKMVAEEKPISQSENNITEENSPMGDMDQNDGPDEAKKTKDAKGSRAFKSSLVELIKEILKPTWKDGKITKEDYKTIVKKVTDKVTGTVQRVHIPQTREKIERYLSVSKPKVNKLIQAYVEKVQKA* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3271 779 MobiDBLite consensus disorder prediction 93 139 - -
Mtr8g3271 779 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 777 - -
Mtr8g3271 779 SUPERFAMILY CCCH zinc finger 193 217 IPR036855 GO:0046872
Mtr8g3271 779 MobiDBLite consensus disorder prediction 653 697 - -
Mtr8g3271 779 MobiDBLite consensus disorder prediction 160 181 - -
Mtr8g3271 779 MobiDBLite consensus disorder prediction 120 136 - -
Mtr8g3271 779 MobiDBLite consensus disorder prediction 284 329 - -
Mtr8g3271 779 MobiDBLite consensus disorder prediction 1 80 - -
Mtr8g3271 779 SUPERFAMILY CCCH zinc finger 258 281 IPR036855 GO:0046872
Mtr8g3271 779 SMART c3hfinal6 133 159 IPR000571 GO:0046872
Mtr8g3271 779 SMART c3hfinal6 193 218 IPR000571 GO:0046872
Mtr8g3271 779 SMART c3hfinal6 257 282 IPR000571 GO:0046872
Mtr8g3271 779 ProSiteProfiles Zinc finger C3H1-type profile. 133 160 IPR000571 GO:0046872
Mtr8g3271 779 MobiDBLite consensus disorder prediction 93 110 - -
Mtr8g3271 779 Pfam CCCH-type zinc finger 261 281 IPR041367 -
Mtr8g3271 779 MobiDBLite consensus disorder prediction 160 189 - -
Mtr8g3271 779 Gene3D - 232 289 - -
Mtr8g3271 779 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 777 - -
Mtr8g3271 779 Pfam RNA-binding, Nab2-type zinc finger 138 157 - -
Mtr8g3271 779 Pfam RNA-binding, Nab2-type zinc finger 197 216 - -
Mtr8g3271 779 Gene3D - 132 221 - -
Mtr8g3271 779 MobiDBLite consensus disorder prediction 659 678 - -
Mtr8g3271 779 MobiDBLite consensus disorder prediction 683 697 - -
Mtr8g3271 779 ProSiteProfiles Zinc finger C3H1-type profile. 257 283 IPR000571 GO:0046872
Mtr8g3271 779 MobiDBLite consensus disorder prediction 34 70 - -
Mtr8g3271 779 ProSiteProfiles Zinc finger C3H1-type profile. 192 219 IPR000571 GO:0046872
Mtr8g3271 779 MobiDBLite consensus disorder prediction 284 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3271 Mtr-Chr8 43179245 43188339 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr8g3271 zf-CCCH_4 2.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3271 - K22909 gmx:100783856 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3271 8 43179245 43188339 Mtr8g3271 8 43179245 43188339 ECH
Mtr3g3337 3 47310200 47319060 Mtr8g3271 8 43179245 43188339 ECH