Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3270 ATGAATAAACCCATTAAACTCGCAATAACCACTCTCTACATGGCTTCTCTCTTTACTTTCTCTCTCTTCCTTTTCATCACTCTCTCTTCCGCCACTCACCATCACAACCACAATCACCACCAACCTACTCCCTCCCCCTCCGTTTCTCCCACCGCCGGGTCAGAGATCCAACAAGCCTGCAAAGCAACCCGATTCCCACAACAATGCGAATCATCACTCGCCAATCTCCCTCCAAATCCCACCGCTCTCCAACTCATCCAATCGGCCATCAACCTCTCATCTACCAATCTCGTAACCGCCCAATCCATGGTGAAGGCTATTCTAGATTCTTCCTCCAGTAGCCGTAACCGCACCGTCGCCGCCACCACCTGTATCGAAATACTAACGAATTCACAAAACCGCATTTCTCTCTCCAACGACGCTTTAACACATGGAAAAATTAAAGACGCTCGAGCATGGCTGACCGCCGCCTTAGTTTACCAGTACGACTGCTGGAACAGCCTGAAATACGCCAACGACACTCACGCCGTCGGTGAAGCTATGTCGTTTATCGATTCCCTTGAGACGCTCACTAGTAACGCCCTTGCCATGGCGTTTTCCTACGACGTTTATGGCAAAGACACGTCGTTTTGGAAGCCGCCTACCACCGAGCGCGACGGTTTATGGCAGGCCACTGGATCGGGCGGAGGATCGGTGTCTAGCGTAGGGATTCCGGCGAAGTTGACGCCGGATGTTACAGTGTGTAAGGGAGGGGAGAAGGGTTGTTATAAGACGGTGCAAGAAGCTGTTAATGCTGCGCCGGATAACGGCGTTGACAGGAAGAGGTTTGTCATATATATCAAAGAAGGGGTTTATGAGGAAACCGTTAGGGTTCCGTTGGAGAAGAGAAATGTGGTGTTTTTAGGTGATGGAATCGGGAAGACGGTTATTACCGGTTCTGCTAATGTGGGCCAGCCCGGAATGACTACTTACAACTCTGCCACCGTAGCGGTTCTTGGCGATGGATTCATGGCAAAGGATCTGACGATCGAAAACACAGCAGGTCCTGATGCACACCAAGCAGTGGCATTCAGATTAGACAGTGATCTTTCAGTAATTGAGAATTGTGAATTTTTAGGAAATCAAGATACTCTGTATGCTCATTCCCTGCGCCAATTCTACAAATCATGCCGCATTGTAGGCAATGTGGATTTTATCTTTGGAAACTCAGCTGCAATCTTTCAAGACTGTCAAATTCTGGTTCGTCCTAGACAACTCAAGCCAGAGAAGGGTGAGAACAATGCCATCACTGCTCATGGTAGAACCGACCCTGCACAGAGTACAGGATTTGTTTTCCAGAACTGTTTGATTAATGGAACTGAGGATTACATGGCATTATATCATAGTAATCCTAAAGTGCATAAAAACTATTTGGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATTCATTCGATATTAGAAGTCCTTGTTACACCTCAGGGTTGGATGCCATGGAGTGGTGACTTTGCACTTAAGACACTTTATTATGGAGAATTTGAGAATTCTGGTGCTGGTTCTGATTTGTCTCAGAGAGTGTCTTGGAGCAGTAAAATTCCCGCTGAACATGTGTCGAGTTATTCAGCGGAGAATTTCATTCAAGGAGGTGAATGGATGCAATCATCTCATTTATCAGCACATCATGGTAGGAGTCATCACAGCACTCATAGAAGGCATGAGTAA 1725 0.4684 MNKPIKLAITTLYMASLFTFSLFLFITLSSATHHHNHNHHQPTPSPSVSPTAGSEIQQACKATRFPQQCESSLANLPPNPTALQLIQSAINLSSTNLVTAQSMVKAILDSSSSSRNRTVAATTCIEILTNSQNRISLSNDALTHGKIKDARAWLTAALVYQYDCWNSLKYANDTHAVGEAMSFIDSLETLTSNALAMAFSYDVYGKDTSFWKPPTTERDGLWQATGSGGGSVSSVGIPAKLTPDVTVCKGGEKGCYKTVQEAVNAAPDNGVDRKRFVIYIKEGVYEETVRVPLEKRNVVFLGDGIGKTVITGSANVGQPGMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIVGNVDFIFGNSAAIFQDCQILVRPRQLKPEKGENNAITAHGRTDPAQSTGFVFQNCLINGTEDYMALYHSNPKVHKNYLGRPWKEYSRTVFIHSILEVLVTPQGWMPWSGDFALKTLYYGEFENSGAGSDLSQRVSWSSKIPAEHVSSYSAENFIQGGEWMQSSHLSAHHGRSHHSTHRRHE* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3270 574 Pfam Pectinesterase 244 549 IPR000070 GO:0030599|GO:0042545
Mtr8g3270 574 PANTHER PECTINESTERASE 23 555 - -
Mtr8g3270 574 SUPERFAMILY Pectin lyase-like 243 556 IPR011050 -
Mtr8g3270 574 SMART PMEI_2 51 197 IPR006501 GO:0004857
Mtr8g3270 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 200 IPR035513 -
Mtr8g3270 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 197 IPR035513 -
Mtr8g3270 574 Pfam Plant invertase/pectin methylesterase inhibitor 55 197 IPR006501 GO:0004857
Mtr8g3270 574 TIGRFAM PME_inhib: pectinesterase inhibitor domain 18 197 IPR006501 GO:0004857
Mtr8g3270 574 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 23 555 - -
Mtr8g3270 574 MobiDBLite consensus disorder prediction 34 53 - -
Mtr8g3270 574 CDD PMEI-like_3 59 197 - -
Mtr8g3270 574 Gene3D - 238 563 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3270 Mtr-Chr8 43173264 43175979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3270 49 556 Carbohydrate Esterase AT5G09760 66.279 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3270 - - adu:107480269 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3270 8 43173264 43175979 Mtr8g3270 8 43173264 43175979 ECH
Mtr8g3270 8 43173264 43175979 Mtr3g3336 3 47295116 47297783 PCT