Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3265 ATGCTGAGCTGTGATGATGATCATGATGATGGAGATATTGATCTATTCTATGACTCATTGGATAGTTTAACAGGTGAAGATTCTGTTTTAGACGAAGAAGGGTTTGGTTCTGAAAGGAGAGGTTGTTTTGTTTATGATGAAATTTGGGTGAATGAGCCTATTAGTGTGAAGGAAAGAAGGGAACGTTTTCTGCAGGGTATGGATTTAGCTTACTCTTCTTCCAAGGTTTGTTCACAAGAGAAAACAACGTGTTTTGATGACTGGTCGGTCACATTGGGGTCGGAGAGGATCGTAGCGAGCAGTGGAGCAGTCTCAAATGCAAGCATTTCACCTTCTGGTAAAGTATCTGGGAAGTTGGTTCTCTCTGGATGGAATGCAGCTTCTGAAGCTGAAGTCTTGTTGGAAGATCTTAAAAGGCGTCGTGAGTATGAAGTGGACGGTAGTTTTCAAGAGCACAGACAGAGAGAAGGTGAGGCAAAAGAAGAATTTTGGGATTTCGATAATGGTAAAGCTAATAGGAAAAACTGGTTGAAGCGTTTTGTGAACATCAGGAAAGGCGACAAAGGAAATTTTAGATCAAAACTGAATGCAGCAACGAACAAAACTCGTAGAGTGAAGGTAAAGCAGAATAAAAAGAGGTGGATGGAGTTCAGTGAGGTATACATTGGACAAGAAATTAGAGCTCACAAAGGACTAATATGGACTATGAAATTCAGTCCCAATGGTCAGTATTTGGCTAGTGGAGGTGAAGATGGTGTTGTGCGCATATGGCGCGTTTTCTCACGTAACAAAAGCCATCCTCCCTTTGTTTCCCTTCCAAATGATATTTTTCAAATTGAGGAATCGCCACTTCAAGAATTGTTTGGTCATTCCAGTGATATCTTGGATTTGGCCTGGTCTAATTCAGATATTCTTCTTTCGTCTTCGATGGATAAAACTGTTCGTGCTTGGAAAATCAGTTGTGATCAATGTCTAAGTGTTTTCCCTCACAAAGGCTTTGTGACATGCATTCAATTCAACCCTGTCAATGAAAATTACTTTATCAGTGGATCCATTGATGGTAAAGTTCGAATATGGGGAATACGTGAAGAACGAGTTATTGACTGGGCAGATATACGAGATGTCATAAGTGCTATAAGTTACCAACAAGATGGAAAAGGATTTGTAGTTGGTTCTCTTACAGGCACATGCCGTTTTTATGTTGCTTCAGGAAAATATTTCCAGCTTGAGGGGCAGATAGATATCCCTGGAAAGAAGAAAGCATCAGGCAACAAGATTACTGGCATTCAGTTCTTCCAAAACAACTGTCAGAGAATTATGATCACATCTGAAGATTCCAAAATCTGCATATTGGATCAAACTGAGATTGTTCAGAAATACAAAGGCCTTCCATGGTCAGGAAGTCAGATGTCCGGTTCATTTACATCAAGTGGGAAACATATAATTTCAGTCGGAGAGGACTCACACGTGTATATTTGGAACTTCAATGACTTCAAAAGTGGTTCTTCGAAAAAAACGAAATCGGACTATTCTTGTGAGTACTTTTCCTTCAAGGGTGTAACTGTTGCAATACCTTGGTGTGGCATGAAAACAGATAGACGTGGCTGTAGAATTAACTTTTCTCACTATTCTCCGGAAGCAAAAAGCAAGCTAGAGGTTGCTTCTGAGGTTAGAGATACAGAACGATTTTCTCTTGGTAATTGGTTCTTCATTGATGGTACATGCCGAGGTTCTACTTCTATGACATGGCCTGAGGAGAAACTTCCAACATGGGATTTACCTCTTGTAGAAGATGAATGTGATCATCAAAATTTATGTCACGAAGATAGTAGCCATGGAAGGAATATATCAGAAACATGGGGTCTAACAATAGTAGCAGCTGGCAGTGATGGAACTATCAAGACATTCCACAATTTTGGCTTGCCTGTTAGGCTCTAG 1938 0.402 MLSCDDDHDDGDIDLFYDSLDSLTGEDSVLDEEGFGSERRGCFVYDEIWVNEPISVKERRERFLQGMDLAYSSSKVCSQEKTTCFDDWSVTLGSERIVASSGAVSNASISPSGKVSGKLVLSGWNAASEAEVLLEDLKRRREYEVDGSFQEHRQREGEAKEEFWDFDNGKANRKNWLKRFVNIRKGDKGNFRSKLNAATNKTRRVKVKQNKKRWMEFSEVYIGQEIRAHKGLIWTMKFSPNGQYLASGGEDGVVRIWRVFSRNKSHPPFVSLPNDIFQIEESPLQELFGHSSDILDLAWSNSDILLSSSMDKTVRAWKISCDQCLSVFPHKGFVTCIQFNPVNENYFISGSIDGKVRIWGIREERVIDWADIRDVISAISYQQDGKGFVVGSLTGTCRFYVASGKYFQLEGQIDIPGKKKASGNKITGIQFFQNNCQRIMITSEDSKICILDQTEIVQKYKGLPWSGSQMSGSFTSSGKHIISVGEDSHVYIWNFNDFKSGSSKKTKSDYSCEYFSFKGVTVAIPWCGMKTDRRGCRINFSHYSPEAKSKLEVASEVRDTERFSLGNWFFIDGTCRGSTSMTWPEEKLPTWDLPLVEDECDHQNLCHEDSSHGRNISETWGLTIVAAGSDGTIKTFHNFGLPVRL* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3265 645 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 287 320 - -
Mtr8g3265 645 Gene3D - 209 521 IPR015943 GO:0005515
Mtr8g3265 645 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Mtr8g3265 645 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Mtr8g3265 645 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Mtr8g3265 645 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 259 - -
Mtr8g3265 645 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 362 - -
Mtr8g3265 645 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 237 257 IPR000009 GO:0000159|GO:0019888
Mtr8g3265 645 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 294 322 IPR000009 GO:0000159|GO:0019888
Mtr8g3265 645 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 429 457 IPR000009 GO:0000159|GO:0019888
Mtr8g3265 645 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 327 IPR001680 GO:0005515
Mtr8g3265 645 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 369 IPR001680 GO:0005515
Mtr8g3265 645 SUPERFAMILY WD40 repeat-like 222 635 IPR036322 GO:0005515
Mtr8g3265 645 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 11 265 - -
Mtr8g3265 645 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 263 645 - -
Mtr8g3265 645 Pfam WD domain, G-beta repeat 282 318 IPR001680 GO:0005515
Mtr8g3265 645 Pfam WD domain, G-beta repeat 323 359 IPR001680 GO:0005515
Mtr8g3265 645 Pfam WD domain, G-beta repeat 225 257 IPR001680 GO:0005515
Mtr8g3265 645 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Mtr8g3265 645 PANTHER WD REPEAT DOMAIN 44 263 645 IPR040324 -
Mtr8g3265 645 PANTHER WD REPEAT DOMAIN 44 11 265 IPR040324 -
Mtr8g3265 645 SMART WD40_4 362 401 IPR001680 GO:0005515
Mtr8g3265 645 SMART WD40_4 321 360 IPR001680 GO:0005515
Mtr8g3265 645 SMART WD40_4 453 494 IPR001680 GO:0005515
Mtr8g3265 645 SMART WD40_4 219 258 IPR001680 GO:0005515
Mtr8g3265 645 SMART WD40_4 280 318 IPR001680 GO:0005515
Mtr8g3265 645 SMART WD40_4 416 452 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3265 Mtr-Chr8 43112189 43117191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3265 215 391 Miscellaneous Gene Families AT5G08390 24.862 1.75e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3265 K20241 - gmx:100819135 907.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3265 8 43112189 43117191 Mtr8g3265 8 43112189 43117191 ECH
Mtr8g3265 8 43112189 43117191 Mtr3g3328 3 47221212 47227096 PCT