Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3264 ATGGTAAGAGACGATTTATGCATCACCGTTCCGAGTTTATTCCGGTGTCCTATTTCCCTCGATGTCATGAAATCTCCGGTGAGTCTCTGCACCGGAGTTACCTACGACCGTTCAAGTATCCAACGCTGGCTCGATAACGGTAACAACACTTGTCCAGCTACTATGCAGATTCTTCAAACAAAGGATTTCGTTCCGAACCGGACGTTACAGAGGCTCATCCAGATCTGGTCCGATTCGGTTCGCCACCGAGTCGACTCGCCGGAATCTCCGTTATCCACCGAGTCGGTTGATAGACGTGATCAATTAATTGTTGCTATCACTGATTTTGAGTCAGGCAGTGAGAACCAGTTCGATTCGCTTGTGAAAATCGTACGGTTCGCGAAAGATTCTGAAGAGAATTGTGTTTTTCTGGCCAAAACGGAGGGATTCGTGTGCGTTCTGGTAAGTTTTCTTGATAATGTTGATGGTGGAGTTGAAAGGAGTGTGGAATTGCTTGAACAGGTTGTTATTGCGTTGGATTTGGTTCTATGTAAAATTGAGAATCGCGAATCGATTTTGAAGAGCAAGAAGGAGAACGAAAGTAAGAGTATACTAGATTCTTTGCTTCTTGTTCTTCAACAAGGAAGTTGCGAATCAAAAATTGCTTCGGTTAGGGTGTTGAAATTCATAGCGGTGGACGCAGAATCGAAGCTTCTAGTAGCTGAAAAAGAAGGTTTACTATCAGAATTGCTCAATCAAATCACGCCGAAGAAAGATCAGAACCTAATGGAGAACGCACTTTCGTGTTTGGTAGCAATCTCAACGCCGAAACGGAACAAGGCGAAACTGGTTCATCTCGGAGCAGTGAAGGTCTTCTCGAACCTTCTAACCGCGTCACCTAGTTTGTGTGTTTCTGTGACGGAGAAGGTGTTGAAACTTCTAGAAACGGTGTCGTCGACGAAGGAGGGGAGGTCGGAGATATGTGAAGCGCCGTCGTGTGTGGTGGCGATAGTGAACAAAGTATTGAAAGTATCCACCGTAGCGACGGAGCACGCGGTTACAATACTATGGAGTGTGTGTTATTTATTTCGTGATCAAAAGGCGCAAGAAGCTGTTACGAAAGCGAATGGATTAACGAAGATTTTGCTTCTGATGCAAAGTAATTGTTCGCCACAAGTTCGTCAAATGTCTGTAGATTTGCTTAAGATTTTTCGTGTTAATTCTAAGTCTTGTCTTTCTTCGTATGATACCAAAACTACTCATATTATGCCATTTTGA 1257 0.4383 MVRDDLCITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQILQTKDFVPNRTLQRLIQIWSDSVRHRVDSPESPLSTESVDRRDQLIVAITDFESGSENQFDSLVKIVRFAKDSEENCVFLAKTEGFVCVLVSFLDNVDGGVERSVELLEQVVIALDLVLCKIENRESILKSKKENESKSILDSLLLVLQQGSCESKIASVRVLKFIAVDAESKLLVAEKEGLLSELLNQITPKKDQNLMENALSCLVAISTPKRNKAKLVHLGAVKVFSNLLTASPSLCVSVTEKVLKLLETVSSTKEGRSEICEAPSCVVAIVNKVLKVSTVATEHAVTILWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPQVRQMSVDLLKIFRVNSKSCLSSYDTKTTHIMPF* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3264 418 SUPERFAMILY ARM repeat 194 404 IPR016024 -
Mtr8g3264 418 SUPERFAMILY RING/U-box 6 79 - -
Mtr8g3264 418 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Mtr8g3264 418 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Mtr8g3264 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 88 IPR013083 -
Mtr8g3264 418 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 418 - -
Mtr8g3264 418 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Mtr8g3264 418 PANTHER WDSAM1 PROTEIN 4 418 IPR045185 GO:0061630
Mtr8g3264 418 CDD RING-Ubox_PUB 14 56 IPR045210 -
Mtr8g3264 418 Gene3D - 91 409 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3264 Mtr-Chr8 43096958 43098435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3264 1 418 U-box Gene Family AT5G64660 55.116 4.26e-147 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3264 - - cam:101496984 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3264 8 43096958 43098435 Mtr8g3264 8 43096958 43098435 ECH
Mtr3g3327 3 47202724 47204488 Mtr8g3264 8 43096958 43098435 ECH
Mtr8g3264 8 43096958 43098435 Mtr3g3327 3 47202724 47204488 PCT