Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3262 ATGAGTTTGGCTTGTATGGAAAGCTCGGAAGAGGGTGGAGGGCATTCAGAGCCACCTGATCCCGATGTTCTCGAAATTGATTCTACTTCTCGTTACATCAAGTACAAAGAAGTGATCGGGAAAGGAGCCTTCAAAACTTTTTACAGGGCATTTGATGAGGTTAATGGAATTGAAGTGGCATGGGGACAGGTTCAGATTGACGAGGTGTTACAGTCACCAGATGACTTAGATAGGCTATACTCGGAAATGCATCTCTTAAAATCGCTGAGGCATAATAACATAGTAAGATTCTATAATTCTTGGATTGATGACAAGCGCAGGACAGTTAATATGATTACTGAGTTGTTTACTTCGGGTAGCCTCAAACAGTATCGTAAAAAACACAAGAAGGTTGACTTGAAGGCTGTCAGAGGATGGGCGAAACAGATTCTAATGGGTTTAAACTACCTTCATACTCACAACCCGCCGATTATACATAGGGACTTGAAATGTGATAACATATTTATTAATGGTCACCAAGGAGAAGTTAAAATTGGAGATTTAGGGCTGGCGACGTTCTTGATGCAGGCTAATGCCAAGACTGTTATAGGAACTCCGGAGTTTATGGCACCCGAAATGTATGATGAAAATTACAACGAATTAGCTGACATATATTCATTTGGTATGTGCATGCTTGAGTTGGTTACTGCCGAGTATCCTTATAGTGAATGCAGAAACTCAGCGCAGATATACAAGAAAGTTTCATCTGGTATAAAGCCTGCTGCTCTTTCTAAAGTGATAGATCCAAAGATAAAATCATTTATTGAAAAATGTATTGTTCCAGCATCCGAAAGATTGTCGGCAAAGGAGCTTCTGATGGACCCCTTTGTTCAAGTGAATGGTTCAACAAAGAACATTTCTCTTCCATTGCCAGATATTGTTCTTCCCAAATTGGGAGCCTCTAAAAACAGATGTATGATGTCAGAAGGTCCTGCTAGTGCACGTATTGGGGCCATTTCTATGGATATTGGTGACACTAACGAGCTACCTGTGATCACTGTACTTGATAATTCCACTGTTGATGCATCAAGTTCTGCGTGTGTTGAGATAAGAAGGTTGAAGGGAGGCGATACCTTCTTTCTAAAAGGTGGTCTAAATGATGAGAATTCTGTATCATTGGTTCTGCGGATAGCTGATCAGAGGGGACAAGCAAAATATATCCATTTCATCTTCTACCTTGACAGTGATACTGCTGTCTCAGTTTCAAAGGAAATGGTTGAGCAACTTGAACTTGCTGATCAGAATGTAAAATTCATAGCTGAGTTAATCGATTTGTTATTGATAAAATTGGTTCCTGAATGGAAACCTTGTGTAGCAATTGATCATTTGGTTTCTGCAAATGATAAATGGACTAGTGCTAGCCAACAGACAGACTCAGAGTTGGCTAAAAACAACGGAAGCTCAAAACATTATACTGAAGATGCAGGCCCCTCAACCTCATTCGGAAGATCTTCCGCGAAAGAGAACGTTGACAATATGGATTTATATTCTGAGATGTCATATGCTTCTGCAACATCAGACATCAATGATAAGTTGTCTATGGTTTCATTTATGTCTGCTGAATTATTGGGATTCGGTGGAGGTAGTCGGAGCTCGTTTGCATCTGAAATTGGGGCATCATCTGATCATGTGAGCAAGTTTTTACACACGGGGAGCAACAGTATGGCGAGCTTATCAAGTTATCCCATTAGTGTTTCCTCCTTGTCCTACCCTGATGATGAGTTGAGAGTAGAGTTAGAAATGATTGAACAGAAATATGAAGAGGCAATTAGAGATTTATCCAAAAGAAGAAACCTGGCCATCGAGGAGATTAAAAAAAGAATGTCAGATAAGATGGTATCATAG 1884 0.4007 MSLACMESSEEGGGHSEPPDPDVLEIDSTSRYIKYKEVIGKGAFKTFYRAFDEVNGIEVAWGQVQIDEVLQSPDDLDRLYSEMHLLKSLRHNNIVRFYNSWIDDKRRTVNMITELFTSGSLKQYRKKHKKVDLKAVRGWAKQILMGLNYLHTHNPPIIHRDLKCDNIFINGHQGEVKIGDLGLATFLMQANAKTVIGTPEFMAPEMYDENYNELADIYSFGMCMLELVTAEYPYSECRNSAQIYKKVSSGIKPAALSKVIDPKIKSFIEKCIVPASERLSAKELLMDPFVQVNGSTKNISLPLPDIVLPKLGASKNRCMMSEGPASARIGAISMDIGDTNELPVITVLDNSTVDASSSACVEIRRLKGGDTFFLKGGLNDENSVSLVLRIADQRGQAKYIHFIFYLDSDTAVSVSKEMVEQLELADQNVKFIAELIDLLLIKLVPEWKPCVAIDHLVSANDKWTSASQQTDSELAKNNGSSKHYTEDAGPSTSFGRSSAKENVDNMDLYSEMSYASATSDINDKLSMVSFMSAELLGFGGGSRSSFASEIGASSDHVSKFLHTGSNSMASLSSYPISVSSLSYPDDELRVELEMIEQKYEEAIRDLSKRRNLAIEEIKKRMSDKMVS* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3262 627 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3262 627 MobiDBLite consensus disorder prediction 467 499 - -
Mtr8g3262 627 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 501 626 - -
Mtr8g3262 627 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 4 500 - -
Mtr8g3262 627 SMART serkin_6 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3262 627 CDD STKc_WNK 31 289 - -
Mtr8g3262 627 SUPERFAMILY Protein kinase-like (PK-like) 35 291 IPR011009 -
Mtr8g3262 627 Gene3D Phosphorylase Kinase; domain 1 18 114 - -
Mtr8g3262 627 Coils Coil 585 616 - -
Mtr8g3262 627 Gene3D Transferase(Phosphotransferase) domain 1 116 297 - -
Mtr8g3262 627 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 501 626 - -
Mtr8g3262 627 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 4 500 - -
Mtr8g3262 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Mtr8g3262 627 ProSiteProfiles Protein kinase domain profile. 33 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g3262 627 Gene3D - 382 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3262 Mtr-Chr8 43066396 43070102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3262 22 620 MAP Kinase Kinase Kinase AT5G41990 45.409 9.57e-165 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Mtr8g3262 Pkinase 2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3262 K08867 - gmx:121175054 823.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3262 8 43066396 43070102 Mtr8g3262 8 43066396 43070102 ECH
Mtr8g3262 8 43066396 43070102 Mtr3g3326 3 47167839 47171626 PCT