Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3260 ATGAATGTGATGGATTATGAGCAATTTGATTACTCATTCACCCCTCCTTACATGAACCAGCTGCATGAGTGTAGCTTAGAAAATTTATCACCACTCCAAGCAGAAGATCTCTTATTTCCAAATACAATCCTAGATGAAATATTGTTTGATCAAGACCAATCACAATATCTCTCATCTCCAAATACAATCCTAGACGAAATCTTCGATCAAGAAGAGTCCATGCAAGGATTGCTGCAGCAACATACAAACCTCGACTTCAATATCATAAATCATGAACAGGCAATGGCTCTAGAGTATGAATTGTGTGGTGGAGTTACAGAAAAAGGCCGCGAAAATGTGTTTGTTTCGAGGGAAAAAGATTCTTATTGGAAGGAAGTTCAAGAAGAGTTAATGGAAGAGACAAGTTTAGTTGATCTTTTGCTGATAGGAGCTGAAGCTGCTGAATCACAAAACATGACTCTTGCTTCTGACATAATCGAAAAACTAAACAATGCCTCGTCTGTAGGAAAAGGCGATAGTTTATTGAACAGGTTGTGTCTTTTCTTTACTCAAGGATTGTATTATAAAACTACAAATGCTCCTAAGTTCCATTCAGAACATGTTTCTACACAGACAAGCACATTCTGTGTGTTTCAGATACTTCAAGAACTCTCTCCCTATGTAAAATTTGCTCATTTTACAGCCAACCAGGCGATTTTCGAAGCTACAGCTGGTGTCGAAGATGTTCATGTCATTGATTTTGATATCATGGAGGGAATCCAATGGCCACCGTTGATGGTTGACTTTGCAATGAGAAAGAAGACTACTTCCCTTAGAGTAACAGCAATCACGGTGGATCTGCAAAGTGAAGCCTCGGTTCAACAAACAGGCAGAAGGCTCAAAGAGTTTGCAGATTCAATCAATTTTCCGTTCACGTTTGATACGGTAATGATGGTGAGTGAAGAAGATTTCAAAGAAATTGAACTTGGTGAAACATTTATTGTCAATTGTATGATACATCAGTGGATGCCAAACAGGAGTTTCTCATTGGTCAAAGCTTTTCTCGACTGCGTAACCAAATCATCACCAAGGCTGGTTGTTTTAGTGGAAGAAGAACTGTTTAATTTTTCTAGACTCAAATCCATGTCCTTTGTGGAGTTTTTCTGTGAGGCTTTGCATCACTATATTGCAGTTTCAGATTCACTTGTTAGTACTCTGTCGCGTAGCCATAAGATGGAGTTAGCCCTTATAGAGAAAGAGGTTTTGGGGAATAGAATCTTAGACAGTGTAAGACAGTTTCCTTGTGAAAAAGAGGAGAGAATATTGTGGGAAGGAAGATTTTTTTATTCATTGAAAGGGTATAAACGTGTTGGAATGAGTACATGTAATATTTCACAGGCTAAGTTATTGGTTAGCTTGTTTGGTAAAGGGTATTGGGTGCAATTTGAGAACTGTAAGTTGGCTCTGTGTTGGAAGTCAAGACCTTTGACTTCTGTTTCAATCTGGGTACCAACAGATTATAATATGAGTGACAAGGTCAAATAG 1524 0.3832 MNVMDYEQFDYSFTPPYMNQLHECSLENLSPLQAEDLLFPNTILDEILFDQDQSQYLSSPNTILDEIFDQEESMQGLLQQHTNLDFNIINHEQAMALEYELCGGVTEKGRENVFVSREKDSYWKEVQEELMEETSLVDLLLIGAEAAESQNMTLASDIIEKLNNASSVGKGDSLLNRLCLFFTQGLYYKTTNAPKFHSEHVSTQTSTFCVFQILQELSPYVKFAHFTANQAIFEATAGVEDVHVIDFDIMEGIQWPPLMVDFAMRKKTTSLRVTAITVDLQSEASVQQTGRRLKEFADSINFPFTFDTVMMVSEEDFKEIELGETFIVNCMIHQWMPNRSFSLVKAFLDCVTKSSPRLVVLVEEELFNFSRLKSMSFVEFFCEALHHYIAVSDSLVSTLSRSHKMELALIEKEVLGNRILDSVRQFPCEKEERILWEGRFFYSLKGYKRVGMSTCNISQAKLLVSLFGKGYWVQFENCKLALCWKSRPLTSVSIWVPTDYNMSDKVK* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3260 507 Pfam GRAS domain family 136 495 IPR005202 -
Mtr8g3260 507 PANTHER OS12G0162700 PROTEIN 5 496 - -
Mtr8g3260 507 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 5 496 IPR005202 -
Mtr8g3260 507 ProSiteProfiles GRAS family profile. 127 496 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3260 Mtr-Chr8 43060875 43062398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3260 209 495 GRAS Transcription Factor Family AT1G55580 35.759 9.63e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr8g3260 GRAS 7.3e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3260 - - lja:Lj0g3v0198459.1 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3260 8 43060875 43062398 Mtr8g3260 8 43060875 43062398 ECH