Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3256 ATGTATGCTGCTTCTACTTCCTTTACTTCACAACTCGTCCATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCTTTCAAGACCCAATTGAACATCAATCACTAACTAACTCCCATGTTTTAACAAATAATAACCATAATTCAACAGACTCATATTTTGGAGCTCGTGAATTCGATTCAAATGTTATAATGATACTTGCAGTTTTATTGTGTGCTCTTATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGGTTTAAGGTTTTCTAACGTAGCCCTACACAACGACCCTTCTTTGAGTTCGAGCAACAAAGGAATCAAGAAGAAAGCTCTCAAAACATTCCCCACAGTGAGCTATTCAGCTGAGTTGAAACTTCCAAGTTTGGATACAGAGTGTATTATATGTCTCTCAGAGTTTACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGATTTCACGTTCGTTGCATTGACAAATGGCTAAAGGAACACCCATCATGTCCAAAGTGTAGACAATGTCTTCTTGAAACTTGTAGAAAGATTGTTCGGTCACAACAACCAATTGTTATGCCAGTACTAGAAACCGTTATAAGGATCCAACCACTTGAGCATGAAGCTTTGGAACGTAACTATAGAGAAATATAA 660 0.3803 MYAASTSFTSQLVHELLVESHTRRLLFQDPIEHQSLTNSHVLTNNNHNSTDSYFGAREFDSNVIMILAVLLCALICSLALNSIIRCGLRFSNVALHNDPSLSSSNKGIKKKALKTFPTVSYSAELKLPSLDTECIICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKEHPSCPKCRQCLLETCRKIVRSQQPIVMPVLETVIRIQPLEHEALERNYREI* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3256 219 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Mtr8g3256 219 Pfam Ring finger domain 133 176 IPR001841 -
Mtr8g3256 219 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 219 - -
Mtr8g3256 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 180 IPR013083 -
Mtr8g3256 219 SMART ring_2 134 175 IPR001841 -
Mtr8g3256 219 SUPERFAMILY RING/U-box 112 181 - -
Mtr8g3256 219 CDD RING-H2_PA-TM-RING 133 176 - -
Mtr8g3256 219 PANTHER RING-H2 FINGER PROTEIN ATL78 3 219 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3256 Mtr-Chr8 43026196 43027365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3256 59 180 C3H Transcription Factor Family AT3G10910 51.128 7.23e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3256 K19040 - gmx:100780127 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3256 8 43026196 43027365 Mtr8g3256 8 43026196 43027365 ECH
Mtr8g3256 8 43026196 43027365 Mtr3g3319 3 47127803 47128896 ECH