Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3255 ATGTATGCTTCTACTTCCTTTACTTCACCACTTCTCCATGAACTTCTTGTGGAATCTCACACAAGAAGGTTACTCATTCAAAACCCAGTTGATCATCAATCACTTAAAATCAACTCCCGTATTTTCACAAATAGCCACAATTCAACCGACTCATATTTTAGAGCTCCTGAATTTGATTCAAATGTTGTGATGATACTTGCAGTTGTATTATGTGCTTTTATTGGTCCCCTTGCATTAAACTTTATCATAAGGCGTGCCTTAATATTTTTAAATGTAGCCCTCAACAACGACTCTTCTTCGAGTTCAAGCAACAACAATTCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGCTCTCAAGAAATTTCCTACAATGAGCTATTCCACCGAGTTGAATCTACCAAGTTTGGATACAGATTGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAATTGCGCATTTTGCCTAAATGCAACCATGGATTTCATGTTCGTTGCATTGACAAATGGCTAAAAGAACATTCATCATGTCCAAAGTGCAGACAATGTCTTCTTGAAACTTGTCGAAAGATTGGTGGGTCGCAAGTGCAACCAATTTTGTTGCCAGTGCCAGAAACTATTATAAGGATAGAACCACTAGAGCACGAAGCTTTGGAACGTAACTATAGAGAAATACAAGCTAACAATTAA 696 0.3736 MYASTSFTSPLLHELLVESHTRRLLIQNPVDHQSLKINSRIFTNSHNSTDSYFRAPEFDSNVVMILAVVLCAFIGPLALNFIIRRALIFLNVALNNDSSSSSSNNNSPQLVNKGIKKKALKKFPTMSYSTELNLPSLDTDCMICLSEFTKGEKLRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPILLPVPETIIRIEPLEHEALERNYREIQANN* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3255 231 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 227 - -
Mtr8g3255 231 Pfam Ring finger domain 140 183 IPR001841 -
Mtr8g3255 231 SUPERFAMILY RING/U-box 119 188 - -
Mtr8g3255 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 187 IPR013083 -
Mtr8g3255 231 SMART ring_2 141 182 IPR001841 -
Mtr8g3255 231 CDD RING-H2_PA-TM-RING 140 183 - -
Mtr8g3255 231 PANTHER RING-H2 FINGER PROTEIN ATL78 1 227 IPR044602 GO:0016567|GO:0016740
Mtr8g3255 231 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3255 Mtr-Chr8 43022997 43023909 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3255 58 187 C3H Transcription Factor Family AT3G10910 48.120 1.30e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3255 K19040 - gmx:100780127 299.671