Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3254 ATGTATGCTTCTACTTCTTTTACTTCACCACTTCTACATGAGCTTCTTGTGGAATCTCACACAAGAAGGTTACTCATTCAAAACCCAGTTGATCATCAATCACTTAAAATCAACCCCCCTGTTTTCACGAACAACAACAATTCAACCGACTCAAAGTTCGGAGCTCGTGAATTTGATTCAGATGTTGTGATGATAATTGCAGTTCTATTATGTGCTTTTATTTGTTTACTTGTATTAAACTCCATCATAAGGTGTTTCTTAAGGATTTCAAACAACAATGAATCTTCTTCTAGTTCGAACAGCAATTCTTCGCCTCAATCGGTCAATAAAGGAATCAAGAAGAAAGCTCTTAAGGCATTTCCCACAGTGAGCTACTCAACTGACTTGAAACTACCAAGTTTGGACGCAGAATGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGATTTCATGTTCGTTGCATTGACAAATGGCTAAAAGAACATTCATCATGTCCAAAGTGCAGACAATGTCTTCTTGAAACTTGTCGAAAGATTGGTGGGTCGCAGGTGCAACCAATTGTGTTGCCAGTGCCAGAAATTATTATAGCAATCCAAATGTAA 636 0.3821 MYASTSFTSPLLHELLVESHTRRLLIQNPVDHQSLKINPPVFTNNNNSTDSKFGAREFDSDVVMIIAVLLCAFICLLVLNSIIRCFLRISNNNESSSSSNSNSSPQSVNKGIKKKALKAFPTVSYSTDLKLPSLDAECMICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPIVLPVPEIIIAIQM* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3254 211 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 210 - -
Mtr8g3254 211 PANTHER RING-H2 FINGER PROTEIN ATL78 1 210 IPR044602 GO:0016567|GO:0016740
Mtr8g3254 211 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Mtr8g3254 211 SMART ring_2 138 179 IPR001841 -
Mtr8g3254 211 Pfam Ring finger domain 137 180 IPR001841 -
Mtr8g3254 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 184 IPR013083 -
Mtr8g3254 211 SUPERFAMILY RING/U-box 116 185 - -
Mtr8g3254 211 CDD RING-H2_PA-TM-RING 137 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3254 Mtr-Chr8 43020248 43021038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3254 58 184 C3H Transcription Factor Family AT3G10910 51.471 6.08e-42 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3254 K19040 - gmx:100780127 268.47