Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g3253 | ATGTATACTTCTACTTCCTTAACTTCACAACTCCTCCATGAGCTTCTTGTAGAATCACACACAAGAAGGTTACTCTTCCAAAATCCAATTGATTTTCAATCACCAACCAGCTCCCCTGTGTTAACAAACAATCACAATTCAACAGACTCAAATTTTGGAGCTCGTGAATTTGATTCAAATGTTGTGATGATAGTTGCAGTCCTATTATGTGCTTTTATTTGCTCACTTGCATTAAACTCCATCATAAGGTGTGCCTTAAGGGTTTCAAACGTAGCCATAAACAACAATTCACCTCAATTGGTCAACAAAGGAATCAAGAAGAAAGCTCTCAAGAAATTTCCTACAATGAGCTATTCCACCGAGTTGAATCTACCAAGTTTGGATACAGATTGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAATTGCGCATTTTGCCTAAATGCAACCATGGATTTCATGTTCGTTGCATTGACAAATGGCTAAAAGAACATTCATCATGTCCAAAGTGCAGACAATGTCTTCTTGAAACTTGTCGAAAGATTGGTGGGTCGCAAGTGCAACCAATTGTGTTGCCAGTGCCAGAAACTATTATAACTATCCAACCACTAGAACCTCAAGCTTTGGAGCGTAACTATAGGGAAATATAA | 654 | 0.3807 | MYTSTSLTSQLLHELLVESHTRRLLFQNPIDFQSPTSSPVLTNNHNSTDSNFGAREFDSNVVMIVAVLLCAFICSLALNSIIRCALRVSNVAINNNSPQLVNKGIKKKALKKFPTMSYSTELNLPSLDTDCMICLSEFTKGEKLRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPIVLPVPETIITIQPLEPQALERNYREI* | 218 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g3253 | 217 | SMART | ring_2 | 131 | 172 | IPR001841 | - | |
| Mtr8g3253 | 217 | CDD | RING-H2_PA-TM-RING | 130 | 173 | - | - | |
| Mtr8g3253 | 217 | SUPERFAMILY | RING/U-box | 109 | 178 | - | - | |
| Mtr8g3253 | 217 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 217 | - | - | |
| Mtr8g3253 | 217 | PANTHER | RING-H2 FINGER PROTEIN ATL78 | 1 | 217 | IPR044602 | GO:0016567|GO:0016740 | |
| Mtr8g3253 | 217 | Pfam | Ring finger domain | 130 | 173 | IPR001841 | - | |
| Mtr8g3253 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 177 | IPR013083 | - | |
| Mtr8g3253 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 131 | 173 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr8g3253 | Mtr-Chr8 | 43012307 | 43013166 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g3253 | 57 | 177 | C3H Transcription Factor Family | AT3G10910 | 50.376 | 3.91e-40 | 134 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g3253 | K19040 | - | gmx:100780127 | 305.449 |