Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3252 ATGTATGCTTCTACTTCTTTTACTTCACAACTCCTCCATGAGCTTCTTGTAGAATCACACACAAGAAGGTTACTCTTCCAAAACCCAGTTGATCATCAATTCACACACAATAACAATTCAACTAACTCGTATTTTGGAGCTCGTGAGTTTGAATCAAATGTTGTGATGATAGTTTCTGTCCTATTGTGTGCTATTATTTGCTCAATTGCATTAAACTCCATTGTAAGGTGTGCCCTAAACGTAGCCATCATCAACGACTCTTCTTTGAGTTCTAGCATCAACTCTTCACCTCAATTTGCCAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTCCCAACAGTAAGTTATTCAACTGAGTTGAAACTACCAACTTTGGATACAGAGTGTGTGATATGTCTCTCAGAATTCACAAAAGGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAATCACACTCATCATGCCCTAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATCGGAAGCACCGCCTCCTATGTTGCCGGTGCCGGAAACTATTATTAGGATTCAGCCACTAGACCATGAAGCTTTTGAATGTAATTATAGGGAAGAAAACAGATAA 657 0.3973 MYASTSFTSQLLHELLVESHTRRLLFQNPVDHQFTHNNNSTNSYFGAREFESNVVMIVSVLLCAIICSIALNSIVRCALNVAIINDSSLSSSINSSPQFANKGIKKKALKTFPTVSYSTELKLPTLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKSHSSCPKCRQCLLETCRKIVGSEAPPPMLPVPETIIRIQPLDHEAFECNYREENR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3252 218 SMART ring_2 130 171 IPR001841 -
Mtr8g3252 218 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Mtr8g3252 218 SUPERFAMILY RING/U-box 109 177 - -
Mtr8g3252 218 PANTHER RING-H2 FINGER PROTEIN ATL78 1 216 IPR044602 GO:0016567|GO:0016740
Mtr8g3252 218 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 216 - -
Mtr8g3252 218 CDD RING-H2_PA-TM-RING 129 172 - -
Mtr8g3252 218 Pfam Ring finger domain 129 172 IPR001841 -
Mtr8g3252 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3252 Mtr-Chr8 43008128 43009021 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3252 50 191 C3H Transcription Factor Family AT3G10910 47.297 2.27e-41 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3252 K19040 - gmx:100780127 301.982