Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3251 ATGTATGCTTCTATTTCCTTTACTACACAAATATTCAATGAGCTTCTTGTGGAATCTCACATAAGAAGGTTACTCATTCAAAACCCAGTTGATCATCAATCACTAACCAACTCCCCTACTTTAACAAACAACCATAATTCAACAGACTCAAATTTTGGAGATCGTGAATTTGATTCAAAAGTTGTGATGATACTTGCAGTCATATTATGTGTTTTTATTTGCTCACTTGCATTAAACTCCATTATCAGGTGTGCCTTAAGGTTTTCAAACGTAGCCATCAACAACGACTCTTCTAGTTCGAACAGCAATTCTTCGCTTCAATCGGTCAATAAAGGAATCAAGAAGAAAGCTCTTAAGGCATTTCCCACAGTGAGCTACTCAACTGACTTGAAACTACCAAGTTTGGACGCAGAATGTATGATATGTCTCTCAGAGTTCACAAAGGGTGAAAAGGTGCGCATTTTGCCTAAATGCAACCATGGATTTCATGTTCGTTGCATTGACAAATGGCTAAAAGAACATTCATCATGTCCAAAGTGCAGACAATGTCTTCTTGAAACTTGTCGAAAGATTGGTGGGTCGCAGGTGCAACCAATTGTGTTGCCAGTGCCAGAAATTATTATAAGGATCGAACCACTAGAGCACGAAGCTTTGGAACGTAACTATAGGGAAATATAA 678 0.382 MYASISFTTQIFNELLVESHIRRLLIQNPVDHQSLTNSPTLTNNHNSTDSNFGDREFDSKVVMILAVILCVFICSLALNSIIRCALRFSNVAINNDSSSSNSNSSLQSVNKGIKKKALKAFPTVSYSTDLKLPSLDAECMICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKEHSSCPKCRQCLLETCRKIGGSQVQPIVLPVPEIIIRIEPLEHEALERNYREI* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3251 225 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Mtr8g3251 225 SUPERFAMILY RING/U-box 117 186 - -
Mtr8g3251 225 CDD RING-H2_PA-TM-RING 138 181 - -
Mtr8g3251 225 PANTHER RING-H2 FINGER PROTEIN ATL78 1 225 IPR044602 GO:0016567|GO:0016740
Mtr8g3251 225 Pfam Ring finger domain 138 181 IPR001841 -
Mtr8g3251 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 185 IPR013083 -
Mtr8g3251 225 SMART ring_2 139 180 IPR001841 -
Mtr8g3251 225 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3251 Mtr-Chr8 43002313 43003182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3251 36 185 C3H Transcription Factor Family AT3G10910 47.134 3.59e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3251 K19040 - gmx:100780127 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3251 8 43002313 43003182 Mtr3g3319 3 47127803 47128896 PCT