Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3248 ATGTATGCTTCTACTTCTTTTACTTCACAACTCCTCCATGAGCTTCTTGTAGAATCACACACAAGAAGGTTACTCTTCCAAAATCCAATTGATTATCAATCACCAACCAGCTCCCCTGTTCTCACACACAACCATAATTCAACTAACTCATATTTTGGAATTCGTGAATTTGATGCAAATGTTGTGATGATACTTGCAGTTCTATTGTGTGCTCTTATTTGCTCACTTGCCTTAAACTCGATCATAAGGTGCGCCTTAAGGTTTTCTAACGTAGCCCTAAACAACGGCTCTTCTTCGAGTTCGAGCAGCAACTCCTCACCTCAATTGGCTAACAAAGGAATCAAGAAGAAAGCTCTCAAGACATTTCCAACAGTAAGTTATTCAACTGAGTTAAAACTACCAACTTTGGATACAGAGTGTGTGATATGTCTCTCAGAATTCACAAAAGGTGAAAAGGTGCGCATTTTGCCTAAATGCAATCATGGTTTCCATGTTCGTTGCATCGACAAATGGCTAAAATCACACTCATCATGCCCTAAGTGCAGACAGTGCCTCCTTGAGACTTGTCGAAAGATTGTTGGATCGGAAGCACCGCCTCCTATGTTGCCGGTGCCGGAAACTATTATTAGGATTCAGCCACTAGACCATGAAGCTTTTGAATGTAACTATAGGGAAGAAAGTAGATAA 687 0.4061 MYASTSFTSQLLHELLVESHTRRLLFQNPIDYQSPTSSPVLTHNHNSTNSYFGIREFDANVVMILAVLLCALICSLALNSIIRCALRFSNVALNNGSSSSSSSNSSPQLANKGIKKKALKTFPTVSYSTELKLPTLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKSHSSCPKCRQCLLETCRKIVGSEAPPPMLPVPETIIRIQPLDHEAFECNYREESR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3248 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 186 IPR013083 -
Mtr8g3248 228 Pfam Ring finger domain 139 182 IPR001841 -
Mtr8g3248 228 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Mtr8g3248 228 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
Mtr8g3248 228 PANTHER RING-H2 FINGER PROTEIN ATL78 1 226 IPR044602 GO:0016567|GO:0016740
Mtr8g3248 228 SMART ring_2 140 181 IPR001841 -
Mtr8g3248 228 CDD RING-H2_PA-TM-RING 139 182 - -
Mtr8g3248 228 SUPERFAMILY RING/U-box 119 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3248 Mtr-Chr8 42988543 42989419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3248 57 201 C3H Transcription Factor Family AT3G10910 51.678 4.74e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3248 K19040 - gmx:100780127 318.161