Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3246 ATGGGTGCTACTCGGCAGAAATGGTCATCGGAAGAGGAAGTGGCACTCAAAGCTGGAGTTGTCAAACATGGGGTGGGGAAATGGAGCAAAATACTCAAGGATCCTGAGTTTAACCATGTGTTGTATATCCGCTCAAATATTGATCTCAAGGATAAATGGAGAAATATGAGCCTGAAGGCAAATGGATCATCCTCCGGGGACAACTCTCAGCTAGCAATCAAAAGGGTGCGTCATCAGGCACCAGAACAGCGTGACAACTCCATGGCTGTAAATCTTGTTACTACTATTGATGATGAAATTCTTGATGTTCAGCCTCTTCAAGTTAAAACAGATATGCTGGAAATTAAGGGTCCGGAAAGGTCTATCAAAAGATTGGACAACCTTATAATGGAAGCAATATCTAGCTTGAATGAGGTCGATGGTTCTAATAAAACAACTATTGCTTCTTTCATTAAGAACCAATACTGCGCACCGGCAGATTTCAAAAATAAGCTGTCCGCAAAACTGGTGGATCTTGTATCTAGTGGAAAACTGATCAAGGTGAAACATAGGTACATGATTGCGCCTACCCAAGCATATTCAGATAGAGGAGGATACCCACCCATGTTATTATTGGAAGGGAGGCAGAAAGCCTCTATTAAATCTGACAGGGATGGGGGCAATATCCCTACAAAGTCTGACATAGATTATCAAAAAAGAAAGGCTGAGATAGACTTGGAATTGGAAAAGTTAAAGTCCATGTCTTTACAAGAGGTAATCGCATGTGCTGCTCAAGCAGTTGCTGAAGCAGAAGCCGCCATGGCAGAAGCTGAAGAGGCAACAAAGGAGGCGGAGGCTGCAGAAGCAGAAGCAGATGCAGCGGCAGCTATTGCAAAAGCAGCAGAAAAATCACTGCGATGA 900 0.4344 MGATRQKWSSEEEVALKAGVVKHGVGKWSKILKDPEFNHVLYIRSNIDLKDKWRNMSLKANGSSSGDNSQLAIKRVRHQAPEQRDNSMAVNLVTTIDDEILDVQPLQVKTDMLEIKGPERSIKRLDNLIMEAISSLNEVDGSNKTTIASFIKNQYCAPADFKNKLSAKLVDLVSSGKLIKVKHRYMIAPTQAYSDRGGYPPMLLLEGRQKASIKSDRDGGNIPTKSDIDYQKRKAEIDLELEKLKSMSLQEVIACAAQAVAEAEAAMAEAEEATKEAEAAEAEADAAAAIAKAAEKSLR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3246 299 Coils Coil 253 297 - -
Mtr8g3246 299 SMART h15plus2 119 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3246 299 Pfam linker histone H1 and H5 family 126 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3246 299 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Mtr8g3246 299 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 299 - -
Mtr8g3246 299 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mtr8g3246 299 SMART sant 4 59 IPR001005 -
Mtr8g3246 299 PANTHER SINGLE MYB HISTONE 4 1 299 IPR044597 GO:0003691
Mtr8g3246 299 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Mtr8g3246 299 Gene3D - 8 92 - -
Mtr8g3246 299 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Mtr8g3246 299 CDD SANT_TRF 6 56 - -
Mtr8g3246 299 Gene3D - 119 195 IPR036388 -
Mtr8g3246 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Mtr8g3246 299 SUPERFAMILY "Winged helix" DNA-binding domain 120 197 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3246 Mtr-Chr8 42974783 42979837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3246 1 250 Single Myb Histone (SMH) Gene Family AT1G49950 47.287 3.35e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr8g3246 Linker_histone 1.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3246 K09422 - gmx:778173 281.567