Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g3240 ATGAAAAGAAACAATCCATATTTGGTTGTGGTAATCATACAAGCCATATATGCTGCTATGTTTCTTCTGTCAAAAGCTGCATTCGACCATGGCATGAACAATTTCGTCTTTGTTTTCTACAGACAATCTGCAGCTACTATTTTTCTCACACCTTTTGCTCTCTTCTTTGAATGGAAAAGTGCACCGCCTCTGCCATTCACGACGTTTTGCAAGATCTTCTTCATTTCTTTCATCGGGATCACATCGAGTTTGGACATATATGGTATTGCTCTAATAAACACTTCTGCAACTTTGGCCGCTGCCACTACTAACTGTCTCCCAGTGATTACCTTCTTCTTGGCACTCATACTCAGAATCGAAGTTTTGAGAGTAAAGACAGCTGCTGGGGCTGCTAAGTTGGCTGGTGTTGTGGCATGTTTGGGTGGAGCAGCAACCCTTGCTTTTTATAAAGGTCCTCAATTGGAACTTTTATCCCATTTTCATTTTTTGGGAAATTACCATAAAACCCAACAACATCAGGGCCATGTTCTTCTATCTGGATCATCATGGATCAAGGGTTGCTTCCTCATGCTTCTTTCCAACACCTTTTGGGGAATGTGGCTTGTACTGCAAACTTTTATCATAAAAGGTTACCCTTCAAAGCTGCTACTCACAACTCTTCAATGTTTCTTAAGCTCAATTCAGTCTTTAGTCGTAGCGTTGGCTGTAGAAAGAGACTTTGAACAATGGAAATTGGGTTGGAATATCAGACTCGTCGCTGTGTTATATTGTGGAATAATGGTGACTGGTGTGACATATTACTTACAAACATGGGTTATAGAAAAGAGAGGACCAGTGTTTCTTGCCATGTCAACACCATTAGCTCTGATCATGACTATGTTATCCTCAGCAATTCTCCTTGGCGAGATACTAAGTTTAGGAAGCCTTTTGGGTAGCTGCGGTTTGGTTCTAGGACTGTACTTTGTGCTGTGGGGAAAGAGTAGAGAGCAAATGCCAAAAGCTTCCGTAGACATAGAGCAAGCTTCGTGTTTGAGTGAAACTAACAAGTGA 1050 0.4133 MKRNNPYLVVVIIQAIYAAMFLLSKAAFDHGMNNFVFVFYRQSAATIFLTPFALFFEWKSAPPLPFTTFCKIFFISFIGITSSLDIYGIALINTSATLAAATTNCLPVITFFLALILRIEVLRVKTAAGAAKLAGVVACLGGAATLAFYKGPQLELLSHFHFLGNYHKTQQHQGHVLLSGSSWIKGCFLMLLSNTFWGMWLVLQTFIIKGYPSKLLLTTLQCFLSSIQSLVVALAVERDFEQWKLGWNIRLVAVLYCGIMVTGVTYYLQTWVIEKRGPVFLAMSTPLALIMTMLSSAILLGEILSLGSLLGSCGLVLGLYFVLWGKSREQMPKASVDIEQASCLSETNK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g3240 349 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020|GO:0016021
Mtr8g3240 349 Pfam EamA-like transporter family 7 131 IPR000620 GO:0016020|GO:0016021
Mtr8g3240 349 PANTHER WAT1-RELATED PROTEIN 7 331 - -
Mtr8g3240 349 PANTHER WAT1-RELATED PROTEIN 7 331 IPR030184 GO:0016021|GO:0022857
Mtr8g3240 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 147 - -
Mtr8g3240 349 SUPERFAMILY Multidrug resistance efflux transporter EmrE 242 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g3240 Mtr-Chr8 42923733 42928897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g3240 1 257 Nodulin-like Gene Family AT5G64700 60.618 6.92e-98 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g3240 - - ccaj:109799350 504.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g3240 8 42923733 42928897 Mtr8g3240 8 42923733 42928897 ECH
Mtr3g3313 3 47082986 47086470 Mtr8g3240 8 42923733 42928897 ECH
Mtr8g3240 8 42923733 42928897 Mtr3g3313 3 47082986 47086470 PCT